E. Lund and V. Dumeaux, Systems Epidemiology in Cancer, Cancer Epidemiology Biomarkers & Prevention, vol.17, issue.11, pp.2954-2961, 2008.
DOI : 10.1158/1055-9965.EPI-08-0519

L. Alexandrov, S. Nik-zainal, D. Wedge, S. Aparicio, S. Behjati et al., Signatures of mutational processes in human cancer, Nature, vol.27, issue.7463, pp.415-436, 2013.
DOI : 10.1038/nature12477

E. Lund and S. Plancade, Transcriptional output in a prospective design conditionally on follow-up and exposure: the multistage model of cancer

E. Lund, S. Plancade, G. Nuel, H. Bøvelstad, and J. Thalabard, A processual model for functional analyses of carcinogenesis in the prospective cohort design, Medical Hypotheses, vol.85, issue.4, pp.494-501, 2015.
DOI : 10.1016/j.mehy.2015.07.006

URL : https://hal.archives-ouvertes.fr/hal-01264465

M. Spitz and M. Bondy, The evolving discipline of molecular epidemiology of cancer, Carcinogenesis, vol.31, issue.1, pp.127-161, 2010.
DOI : 10.1093/carcin/bgp246

A. Reiner, D. Yekutieli, and Y. Benjamini, Identifying differentially expressed genes using false discovery rate controlling procedures, Bioinformatics, vol.19, issue.3, pp.368-75, 2003.
DOI : 10.1093/bioinformatics/btf877

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=

V. Dumeaux, A. Borresen-dale, J. Frantzen, M. Kumle, V. Kristensen et al., Gene expression analyses in breast cancer epidemiology: the Norwegian Women and Cancer postgenome cohort study, Breast Cancer Research, vol.10, issue.1, p.13, 2008.
DOI : 10.1186/bcr1859

L. Holden and . Classify, NR note SAMBA/11/15 https://www.nr.no/files/samba/ smbi/note2015SAMBA1115classifyStrata.pdf.URL: Please check that the following URLs are working. If not, please provide alternatives: https

B. Phipson and G. Smyth, Permutation P-values Should Never Be Zero: Calculating Exact P-values When Permutations Are Randomly Drawn, Statistical Applications in Genetics and Molecular Biology, vol.9, issue.1, 2010.
DOI : 10.2202/1544-6115.1585

URL : http://arxiv.org/abs/1603.05766

E. Lund, V. Dumeaux, T. Braaten, A. Hjartåker, D. Engeset et al., Cohort Profile: The Norwegian Women and Cancer Study--NOWAC--Kvinner og kreft, International Journal of Epidemiology, vol.37, issue.1, pp.36-41, 2008.
DOI : 10.1093/ije/dym137

S. Hofvind, B. Geller, P. Vacek, S. Thoresen, and P. Skaane, Using the European guidelines to evaluate the Norwegian Breast Cancer Screening Program, European Journal of Epidemiology, vol.16, issue.7, pp.447-55, 2007.
DOI : 10.1007/s10654-007-9137-y

C. Günther, M. Holden, and L. Holden, Preprocessing of gene-expression data related to breast cancer diagnosis: SAMBA/35/14. https://www.nr.no/files/ samba/smbi/note2015SAMBA3514preprocessing.pdf.URL: Please check that the following URLs are working. If not, please provide alternatives: https

P. Du, W. Kibbe, and S. Lin, nuID: A universal naming schema of oligonucleotides for Illumina, Affymetrix, and other microarrays, Biology Direct, vol.2, issue.1, p.16, 2007.
DOI : 10.1186/1745-6150-2-16

M. Carlson, db: Illumina Human Illumina expression annotation data (chip lumiHumanAll). R Package version 1

D. Cox, Regression Models and Life-Tables, J R Stat Soc Ser B Methodol, vol.34, issue.2, pp.187-220, 1972.
DOI : 10.1007/978-1-4612-4380-9_37

O. Aalen, Ø. Borgan, and H. Gjessing, Survival and event history analysis. A process point of view, statistics for biology and health, p.504, 2008.

P. Hu, A. Tsiatis, and M. Davidian, Estimating the Parameters in the Cox Model When Covariate Variables are Measured with Error, Biometrics, vol.54, issue.4, pp.1407-1426, 1998.
DOI : 10.2307/2533667

O. Quigley and J. , Proportional Hazards Regression, Statistics for Biology and Health, 2008.

A. Benner, M. Zucknick, T. Hielscher, C. Ittrich, and U. Mansmann, High-Dimensional Cox Models: The Choice of Penalty as Part of the Model Building Process, Biometrical Journal, vol.36, issue.1
DOI : 10.1002/bimj.200900064

H. Weedon-fekjaer, B. Lindqvist, L. Vatten, O. Aalen, and S. Tretli, Estimating mean sojourn time and screening sensitivity using questionnaire data on time since previous screening, Journal of Medical Screening, vol.42, issue.2, pp.83-90, 2008.
DOI : 10.1016/0169-2607(85)90048-3

M. Todd, M. Shoag, and E. Cadman, Survival of women with metastatic breast cancer at Yale from 1920 to 1980., Journal of Clinical Oncology, vol.1, issue.6, pp.406-414, 1983.
DOI : 10.1200/JCO.1983.1.6.406

V. Dumeaux, J. Ursini-siegel, A. Flatberg, H. Fjosne, J. Frantzen et al., Peripheral blood cells inform on the presence of breast cancer: A population-based case-control study, International Journal of Cancer, vol.91, issue.3, pp.656-67, 2015.
DOI : 10.1002/ijc.29030