The InterPro protein families database: the classification resource after 15 years, Nucleic Acids Research, vol.43, issue.D1, pp.213-221, 2015. ,
DOI : 10.1093/nar/gku1243
URL : https://hal.archives-ouvertes.fr/hal-01222896
The Pfam protein families database, Nucleic Acids Research, vol.40, issue.D1, pp.290-301, 2012. ,
DOI : 10.1093/nar/gkr1065
URL : https://hal.archives-ouvertes.fr/hal-01294685
AntiFam: a tool to help identify spurious ORFs in protein annotation, Database, vol.2012, issue.0, 2012. ,
DOI : 10.1093/database/bas003
SCOOP: a simple method for identification of novel protein superfamily relationships, Bioinformatics, vol.23, issue.7, pp.809-814, 2007. ,
DOI : 10.1093/bioinformatics/btm034
Protein homology detection by HMM-HMM comparison, Bioinformatics, vol.21, issue.7, pp.951-960, 2005. ,
DOI : 10.1093/bioinformatics/bti125
Pfam: the protein families database, Nucleic Acids Research, vol.42, issue.D1, pp.222-230, 2014. ,
DOI : 10.1093/nar/gkt1223
URL : https://hal.archives-ouvertes.fr/hal-01294685
Representative Proteomes: A Stable, Scalable and Unbiased Proteome Set for Sequence Analysis and Functional Annotation, PLoS ONE, vol.55, issue.4, 2011. ,
DOI : 10.1371/journal.pone.0018910.s002
SIFTS: Structure Integration with Function, Taxonomy and Sequences resource, Nucleic Acids Research, vol.41, issue.D1, pp.483-489, 2013. ,
DOI : 10.1093/nar/gks1258
ADDA: a domain database with global coverage of the protein universe, Nucleic Acids Research, vol.33, issue.Database issue, pp.188-191, 2005. ,
DOI : 10.1093/nar/gki096
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Research, vol.25, issue.17, pp.3389-3402, 1997. ,
DOI : 10.1093/nar/25.17.3389
The Pfam protein families database, Nucleic Acids Research, vol.38, issue.Database, pp.211-222, 2010. ,
DOI : 10.1093/nar/gkp985
URL : https://hal.archives-ouvertes.fr/hal-01294685
HMMER web server: 2015 update, Nucleic Acids Research, vol.43, issue.W1, pp.30-38, 2015. ,
DOI : 10.1093/nar/gkv397
Pfam: clans, web tools and services, Nucleic Acids Research, vol.34, issue.90001, pp.247-251, 2006. ,
DOI : 10.1093/nar/gkj149
URL : http://doi.org/10.1093/nar/gkj149
MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins, Nucleic Acids Research, vol.43, issue.D1, pp.315-320, 2015. ,
DOI : 10.1093/nar/gku982
Prediction and analysis of higher-order coiled-coils: Insights from proteins of the extracellular matrix, tenascins and thrombospondins, The International Journal of Biochemistry & Cell Biology, vol.45, issue.11, pp.2392-2401, 2013. ,
DOI : 10.1016/j.biocel.2013.07.011
Evolutionary Patterns in Coiled-Coils, Genome Biology and Evolution, vol.7, issue.2, pp.545-556, 2015. ,
DOI : 10.1093/gbe/evv007
Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions, Nucleic Acids Research, vol.41, issue.12, p.121, 2013. ,
DOI : 10.1093/nar/gkt263
The Evolution and Structure Prediction of Coiled Coils across All Genomes, Journal of Molecular Biology, vol.403, issue.3, pp.480-493, 2010. ,
DOI : 10.1016/j.jmb.2010.08.032