SyMAP v3.4: a turnkey synteny system with application to plant genomes, Nucleic Acids Research, vol.39, issue.10, p.68, 2011. ,
DOI : 10.1093/nar/gkr123
SynBrowse: a synteny browser for comparative sequence analysis, Bioinformatics, vol.21, issue.17, pp.3461-3468, 2005. ,
DOI : 10.1093/bioinformatics/bti555
Finding and Comparing Syntenic Regions among Arabidopsis and the Outgroups Papaya, Poplar, and Grape: CoGe with Rosids, PLANT PHYSIOLOGY, vol.148, issue.4, pp.1772-81, 2008. ,
DOI : 10.1104/pp.108.124867
Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes, Genome Biology, vol.10, issue.8, p.86, 2009. ,
DOI : 10.1186/gb-2009-10-8-r86
LineUp: Statistical Detection of Chromosomal Homology With Application to Plant Comparative Genomics, Genome Research, vol.13, issue.5, 2003. ,
DOI : 10.1101/gr.814403
Building Genomic Profiles for Uncovering Segmental Homology in the Twilight Zone, Genome Research, vol.14, issue.6, pp.1095-1106, 2004. ,
DOI : 10.1101/gr.2179004
Statistical inference of chromosomal homology based on gene colinearity and applications to arabidopsis and rice, BMC Bioinformatics, vol.7, issue.1, p.447, 2006. ,
DOI : 10.1186/1471-2105-7-447
OrthoClusterDB: an online platform for synteny blocks, BMC Bioinformatics, vol.10, issue.1, p.192, 2009. ,
DOI : 10.1186/1471-2105-10-192
Synteny and Collinearity in Plant Genomes, Science, vol.320, issue.5875, pp.486-488, 2008. ,
DOI : 10.1126/science.1153917
Reconstructing contiguous regions of an ancestral genome, Genome Research, vol.16, issue.12, pp.1557-1565, 2006. ,
DOI : 10.1101/gr.5383506
Synteny Block Reconstruction along Chromosomes PLOS ,
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Research, vol.25, issue.17, pp.3389-3402, 1997. ,
DOI : 10.1093/nar/25.17.3389
Rapid and sensitive protein similarity searches, Science, vol.227, issue.4693, pp.1435-1441, 1985. ,
DOI : 10.1126/science.2983426
An efficient algorithm for large-scale detection of protein families, Nucleic Acids Research, vol.30, issue.7, pp.1575-1584, 2002. ,
DOI : 10.1093/nar/30.7.1575
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity, Nucleic Acids Research, vol.40, issue.7, p.49, 2012. ,
DOI : 10.1093/nar/gkr1293
i-ADHoRe 3.0--fast and sensitive detection of genomic homology in extremely large data sets, Nucleic Acids Research, vol.40, issue.2, p.11 ,
DOI : 10.1093/nar/gkr955
Combinatorics of chromosomal rearrangements based on synteny blocks and synteny packs, Journal of Logic and Computation, vol.23, issue.4, pp.815-838, 2013. ,
DOI : 10.1093/logcom/exr047
DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization, Genome Biology, vol.4, issue.10, p.68, 2003. ,
DOI : 10.1186/gb-2003-4-10-r68
DAGchainer: a tool for mining segmental genome duplications and synteny, Bioinformatics, vol.20, issue.18, pp.3643-3646, 2004. ,
DOI : 10.1093/bioinformatics/bth397
Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms, BMC Bioinformatics, vol.8, issue.1, p.82, 2007. ,
DOI : 10.1186/1471-2105-8-82
In: OrthoCluster: a new tool for mining synteny blocks and applications in comparative genomics Advances in database technology, Proceedings of the 11th international conference on Extending database technology, 2008. ,
The Automatic Detection of Homologous Regions (ADHoRe) and Its Application to Microcolinearity Between Arabidopsis and Rice, Genome Research, vol.12, issue.11, pp.1792-1801, 2002. ,
DOI : 10.1101/gr.400202
Comparative study on synteny between yeasts and vertebrates, Comptes Rendus Biologies, vol.334, issue.8-9, pp.629-638, 2011. ,
DOI : 10.1016/j.crvi.2011.05.011
URL : https://hal.archives-ouvertes.fr/hal-00626818
Synteny Block Reconstruction along Chromosomes PLOS ONE | www.plosone ,