Contribution of Aerobic Photoheterotrophic Bacteria to the Carbon Cycle in the Ocean, Science, vol.292, issue.5526, pp.2492-2495, 2001. ,
DOI : 10.1126/science.1059707
Unsuspected diversity among marine aerobic anoxygenic 583 phototrophs, Nature, vol.415, pp.630-633, 2002. ,
Rapid growth rates of aerobic anoxygenic phototrophs in the ocean, Environmental Microbiology, vol.49, issue.10, pp.2401-2406, 2007. ,
DOI : 10.1007/BF00244268
Ecology of aerobic anoxygenic phototrophs in aquatic environments. 587 FEMS microbiology reviews, pp.854-870, 2015. ,
Distinct distribution pattern of abundance and diversity of aerobic anoxygenic phototrophic bacteria in the global ocean, Environmental Microbiology, vol.62, issue.12, pp.3091-3099, 2007. ,
DOI : 10.1360/03wd0156
New light on aerobic anoxygenic phototrophs. The purple 596 phototrophic bacteria Springer, pp.31-55, 2009. ,
Abundance and genetic diversity of aerobic anoxygenic 598 phototrophic bacteria of coastal regions of the Pacific Ocean Applied and environmental 599 microbiology, pp.2858-2866, 2012. ,
Marked seasonality of aerobic 601 anoxygenic phototrophic bacteria in the coastal NW Mediterranean Sea as revealed by 602 cell abundance, pigment concentration and pyrosequencing of pufM gene, Environmental 603 microbiology, pp.2953-2965, 2014. ,
Leucine incorporation by aerobic 605 anoxygenic phototrophic bacteria in the Delaware estuary, The ISME journal, vol.606, issue.607, pp.2339-2348, 2014. ,
Velvet: algorithms for de novo short read assembly using 664, 2008. ,
Microbial gene identification using interpolated Markov models, Nucleic Acids Research, vol.26, issue.2, pp.544-548, 1998. ,
DOI : 10.1093/nar/26.2.544
GENMARK: Parallel gene recognition for both DNA strands, Computers & Chemistry, vol.17, issue.2, pp.123-133, 1993. ,
DOI : 10.1016/0097-8485(93)85004-V
GeneMark. hmm: new solutions for gene finding, Nucleic acids research, vol.670, issue.671, pp.1107-1115, 1998. ,
Toward an online repository of Standard 673, 2008. ,
The RAST Server: Rapid Annotations using Subsystems Technology, BMC Genomics, vol.9, issue.1, pp.75-109, 2008. ,
DOI : 10.1186/1471-2164-9-75
RNammer: 679 consistent annotation of rRNA genes in genomic sequences, Nucleic Acids Res, vol.680, issue.681, pp.3100-3108, 2007. ,
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence, Nucleic Acids Research, vol.25, issue.5, pp.955-0964, 1997. ,
DOI : 10.1093/nar/25.5.0955
Shifting the genomic gold standard for the 684 prokaryotic species definition, Proceedings of the National Academy of Sciences, vol.685, issue.686, pp.19126-19131, 2009. ,
OrthoMCL: identification of ortholog groups for 687, 2003. ,
Genome analysis of multiple pathogenic 690 isolates of Streptococcus agalactiae: implications for the microbial " pan-genome, p.691, 2005. ,
A Genomic Perspective on Protein Families, Science, vol.278, issue.5338, p.694, 1997. ,
DOI : 10.1126/science.278.5338.631
Using MUMmer to identify similar 696 regions in large sequence sets, pp.1426-1429, 2003. ,
Novel Primers Reveal Wider Diversity among Marine Aerobic Anoxygenic Phototrophs, Applied and Environmental Microbiology, vol.71, issue.12, pp.8958-8962, 2005. ,
DOI : 10.1128/AEM.71.12.8958-8962.2005
Microbial phylogeny and diversity: Small subunit ribosomal RNA sequence analysis and beyond, Microbiological Research, vol.166, issue.2, pp.99-110, 2011. ,
DOI : 10.1016/j.micres.2010.02.003
Lack of functional redundancy in the 714 relationship between microbial diversity and ecosystem functioning, Journal of Ecology, vol.715, issue.716, pp.936-946, 2016. ,
Genomic islands in pathogenic and environmental microorganisms, Nature Reviews Microbiology, vol.31, issue.5, pp.414-424, 2004. ,
DOI : 10.1006/plas.1997.1280
Prokaryotic Chromosomes and Disease, Science, vol.301, issue.5634, p.719, 2003. ,
DOI : 10.1126/science.1086802
Analysis of the genome structure of the nonpathogenic probiotic 722, 2004. ,
F factor conjugation is a true type IV secretion system, FEMS Microbiology Letters, vol.224, issue.1, pp.1-15, 2003. ,
DOI : 10.1016/S0378-1097(03)00430-0
Genetic Recombination in Rhodopseudomonas capsulata, Proceedings of, p.734, 1974. ,
DOI : 10.1073/pnas.71.3.971
Importance of widespread gene transfer agent genes in 736 ?-proteobacteria, the National Academy of Sciences Trends in microbiology, vol.71, issue.737, pp.971-97354, 2007. ,
Bacterial motility in the sea and its ecological implications, Aquatic Microbial Ecology, vol.25, issue.739, pp.247-258, 2001. ,
DOI : 10.3354/ame025247
Bacterial Motility on a Surface: Many Ways to a Common Goal, Annual Review of Microbiology, vol.57, issue.1, 2003. ,
DOI : 10.1146/annurev.micro.57.030502.091014
The current ICE age: Biology and evolution of SXT-related integrating conjugative elements, Plasmid, vol.55, issue.3, pp.173-183, 2006. ,
DOI : 10.1016/j.plasmid.2006.01.001
Chromosomal 754 integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 755 105-kilobase genetic element containing the chlorocatechol degradative genes from 756, 1998. ,
Mobilization of plasmids and chromosomal 758 DNA mediated by the SXT element, a constin found in Vibrio cholerae O139, Journal, vol.759, issue.760, pp.2043-2047, 2000. ,
Comparative ICE genomics: insights into the 762 evolution of the SXT/R391 family of ICEs, p.66, 2009. ,
Structure and Mechanism of Cadherins and Catenins in Cell-Cell Contacts, Annual Review of Cell and Developmental Biology, vol.23, issue.1, pp.237-261, 2007. ,
DOI : 10.1146/annurev.cellbio.22.010305.104241
Late Neogene evolution of the, 1999. ,
Catastrophic flood of the Mediterranean after the Messinian salinity 771 crisis, Nature, vol.462, issue.772, pp.778-781, 2009. ,
Geographic Barriers Isolate Endemic Populations of Hyperthermophilic Archaea, Science, vol.301, issue.5635, pp.976-978, 2003. ,
DOI : 10.1126/science.1086909
Geographical isolation in hot spring cyanobacteria, Environmental Microbiology, vol.62, issue.8, pp.650-659, 2003. ,
DOI : 10.1046/j.1462-2920.2003.00460.x
Beyond 777 biogeographic patterns: processes shaping the microbial landscape, Nature Reviews, p.778, 2012. ,