Noncoding RNAs and Epigenetic Mechanisms During X-Chromosome Inactivation, Annual Review of Cell and Developmental Biology, vol.30, issue.1, pp.561-580, 2014. ,
DOI : 10.1146/annurev-cellbio-101512-122415
New Xist -Interacting Proteins in X-Chromosome Inactivation, Current Biology, vol.26, issue.8, pp.338-342, 2016. ,
DOI : 10.1016/j.cub.2016.03.022
URL : https://doi.org/10.1016/j.cub.2016.05.009
A novel role for Xist RNA in the formation of a repressive nuclear compartment into which genes are recruited when silenced, Genes & Development, vol.20, issue.16, pp.2223-2237, 2006. ,
DOI : 10.1101/gad.380906
Methylation of Histone H3 at Lys-9 Is an Early Mark on the X Chromosome during X Inactivation, Cell, vol.107, issue.6, pp.727-738, 2001. ,
DOI : 10.1016/S0092-8674(01)00598-0
X-Inactivation and Histone H4 Acetylation in Embryonic Stem Cells, Developmental Biology, vol.180, issue.2, pp.618-630, 1996. ,
DOI : 10.1006/dbio.1996.0333
URL : https://doi.org/10.1006/dbio.1996.0333
Differential loss of histone H3 isoforms mono-, di-and tri-methylated at lysine 4 during X-inactivation in female embryonic stem cells, Biol. Chem, vol.389, pp.365-370, 2008. ,
Xist-deficient mice are defective in dosage compensation but not spermatogenesis., Genes & Development, vol.11, issue.2, pp.156-166, 1997. ,
DOI : 10.1101/gad.11.2.156
URL : http://genesdev.cshlp.org/content/11/2/156.full.pdf
Requirement for Xist in X chromosome inactivation, Nature, vol.379, issue.6561, pp.131-137, 1996. ,
DOI : 10.1038/379131a0
Characterization of a murine gene expressed from the inactive X chromosome, Nature, vol.351, issue.6324, pp.325-329, 1991. ,
DOI : 10.1038/351325a0
Conservation of position and exclusive expression of mouse Xist from the inactive X chromosome, Nature, vol.351, issue.6324, pp.329-331, 1991. ,
DOI : 10.1038/351329a0
Mammalian X-Chromosome Action: Inactivation Limited in Spread and in Region of Origin, Science, vol.140, issue.3570, pp.976-978, 1963. ,
DOI : 10.1126/science.140.3570.976
Position effect variegation in the mouse, Genetical Research, vol.47, issue.03, pp.291-306, 1974. ,
DOI : 10.1159/000129820
The Spreading of X Inactivation into Autosomal Material of an X;autosome Translocation: Evidence for a Difference between Autosomal and X-Chromosomal DNA, The American Journal of Human Genetics, vol.63, issue.1, pp.20-28, 1998. ,
DOI : 10.1086/301922
Attenuated spread of X-inactivation in an X;autosome translocation, Proc. Natl Acad. Sci. USA 103, pp.7706-7711, 2006. ,
DOI : 10.1023/A:1009266324602
X-Chromosome inactivation: a repeat hypothesis, Cytogenetic and Genome Research, vol.80, issue.1-4, pp.133-137, 1998. ,
DOI : 10.1159/000014969
LINE-1 Activity in Facultative Heterochromatin Formation during X Chromosome Inactivation, Cell, vol.141, issue.6, pp.956-969, 2010. ,
DOI : 10.1016/j.cell.2010.04.042
URL : https://hal.archives-ouvertes.fr/hal-00508558
Molecular and cytogenetic analysis of the spreading of X inactivation in X;autosome translocations, Human Molecular Genetics, vol.11, issue.25, pp.3145-3156, 2002. ,
DOI : 10.1093/hmg/11.25.3145
Efficiency of Xist-mediated silencing on autosomes is linked to chromosomal domain organisation, Epigenetics & Chromatin, vol.3, issue.1, 2010. ,
DOI : 10.1186/1756-8935-3-10
High-resolution Xist binding maps reveal two-step spreading during X-chromosome inactivation, Nature, vol.504, issue.7480, pp.465-469, 2013. ,
DOI : 10.1186/gb-2013-14-4-r36
URL : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3904790/pdf
The Xist lncRNA Exploits Three-Dimensional Genome Architecture to Spread Across the X Chromosome, Science, vol.130, issue.2, p.1237973, 2013. ,
DOI : 10.1007/s00439-011-1008-7
Escape Artists of the X Chromosome, Trends in Genetics, vol.32, issue.6, pp.348-359, 2016. ,
DOI : 10.1016/j.tig.2016.03.007
Inactive X chromosome-specific histone H3 modifications and CpG hypomethylation flank a chromatin boundary between an X-inactivated and an escape gene, Nucleic Acids Research, vol.37, issue.22, pp.7416-7428, 2009. ,
DOI : 10.1093/nar/gkp860
URL : https://academic.oup.com/nar/article-pdf/37/22/7416/16757458/gkp860.pdf
Bimodal quantitative relationships between histone modifications for X-linked and autosomal loci, Proc. Natl Acad. Sci. USA, pp.6949-6954, 2013. ,
DOI : 10.1038/nature03479
URL : http://www.pnas.org/content/110/17/6949.full.pdf
The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA, Genes & Development, vol.25, issue.13, pp.1371-1383, 2011. ,
DOI : 10.1101/gad.633311
Escape from X chromosome inactivation is an intrinsic property of the Jarid1c locus, Proc. Natl Acad. Sci. USA 105, pp.17055-17060, 2008. ,
DOI : 10.1083/jcb.132.3.259
Deletion of an X-Inactivation Boundary Disrupts Adjacent Gene Silencing, PLoS Genetics, vol.20, issue.11, p.1003952, 2013. ,
DOI : 10.1371/journal.pgen.1003952.s008
Boundaries between Chromosomal Domains of X Inactivation and Escape Bind CTCF and Lack CpG Methylation during Early Development, Developmental Cell, vol.8, issue.1, pp.31-42, 2005. ,
DOI : 10.1016/j.devcel.2004.10.018
Escape from X Inactivation Varies in Mouse Tissues, PLOS Genetics, vol.10, issue.13, p.1005079, 2015. ,
DOI : 10.1371/journal.pgen.1005079.s017
URL : https://doi.org/10.1371/journal.pgen.1005079
The ins and outs of gene regulation and chromosome territory organisation, Current Opinion in Cell Biology, vol.19, issue.3, pp.311-316, 2007. ,
DOI : 10.1016/j.ceb.2007.04.016
Precise BAC targeting of genetically polymorphic mouse ES cells, Nucleic Acids Research, vol.39, issue.18, p.121, 2011. ,
DOI : 10.1093/nar/gkr550
Targeted sequencing by proximity ligation for comprehensive variant detection and local haplotyping, Nature Biotechnology, vol.16, issue.10, pp.1019-1025, 2014. ,
DOI : 10.1093/bioinformatics/btp324
Antisense Transcription through the Xist Locus Mediates Tsix Function in Embryonic Stem Cells, Molecular and Cellular Biology, vol.21, issue.24, pp.8512-8520, 2001. ,
DOI : 10.1128/MCB.21.24.8512-8520.2001
Developmental Dynamics and Disease Potential of Random Monoallelic Gene Expression, Developmental Cell, vol.28, issue.4, pp.366-380, 2014. ,
DOI : 10.1016/j.devcel.2014.01.016
The ground state of embryonic stem cell self-renewal, Nature, vol.113, issue.7194, pp.519-523, 2008. ,
DOI : 10.1038/nature06968
The ground state of pluripotency, Biochemical Society Transactions, vol.38, issue.4, pp.1027-1032, 2010. ,
DOI : 10.1042/BST0381027
A Shift from Reversible to Irreversible X Inactivation Is Triggered during ES Cell Differentiation, Molecular Cell, vol.5, issue.4, pp.695-705, 2000. ,
DOI : 10.1016/S1097-2765(00)80248-8
URL : https://doi.org/10.1016/s1097-2765(00)80248-8
Aneuploidy: Cells Losing Their Balance, Genetics, vol.179, issue.2, pp.737-746, 2008. ,
DOI : 10.1534/genetics.108.090878
URL : http://www.genetics.org/content/genetics/179/2/737.full.pdf
Dynamics of gene silencing during X inactivation using allele-specific RNA-seq, Genome Biology, vol.209, issue.1, p.149, 2015. ,
DOI : 10.1002/(SICI)1097-0177(199705)209:1<85::AID-AJA8>3.0.CO;2-T
Convergent evolution of chicken Z and human X chromosomes by expansion and gene acquisition, Nature, vol.12, issue.7306, pp.612-616, 2010. ,
DOI : 10.1016/S0022-2836(05)80360-2
The DNA sequence of the human X chromosome, Nature, vol.428, issue.7031, pp.325-337, 2005. ,
DOI : 10.1093/hmg/9.2.311
X chromosome regulation: diverse patterns in development, tissues and disease, Nature Reviews Genetics, vol.23, issue.6, pp.367-378, 2014. ,
DOI : 10.1371/journal.pbio.1000318
URL : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4117651/pdf
X-inactivation profile reveals extensive variability in X-linked gene expression in females, Nature, vol.211, issue.7031, pp.400-404, 2005. ,
DOI : 10.1006/geno.1997.4797
Differential distribution of long and short interspersed element sequences in the mouse genome: chromosome karyotyping by fluorescence in situ hybridization., Proc. Natl Acad. Sci. USA, pp.7757-7761, 1990. ,
DOI : 10.1073/pnas.87.19.7757
BrentMR initial sequencing and comparative analysis of the mouse genome, Nature, vol.420, pp.520-562, 2002. ,
LINEs in mice: features, families, and potential roles in early development, Chromosoma, vol.105, issue.1, pp.29-39, 2016. ,
DOI : 10.1038/hdy.2010.53
Genomewide Analysis of PRC1 and PRC2 Occupancy Identifies Two Classes of Bivalent Domains, PLoS Genetics, vol.434, issue.10, p.1000242, 2008. ,
DOI : 10.1371/journal.pgen.1000242.s016
Histone H3K27ac separates active from poised enhancers and predicts developmental state, Proc. Natl Acad. Sci. USA, pp.21931-21936, 2010. ,
DOI : 10.1038/nature09266
URL : http://www.pnas.org/content/107/50/21931.full.pdf
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells, Nature, vol.99, issue.7153, pp.553-560, 2007. ,
DOI : 10.1038/nature06008
Distinct and Combinatorial Functions of Jmjd2b/Kdm4b and Jmjd2c/Kdm4c in Mouse Embryonic Stem Cell Identity, Molecular Cell, vol.53, issue.1, pp.32-48, 2014. ,
DOI : 10.1016/j.molcel.2013.11.011
Variant PRC1 Complex-Dependent H2A Ubiquitylation Drives PRC2 Recruitment and Polycomb Domain Formation, Cell, vol.157, issue.6, pp.1445-1459, 2014. ,
DOI : 10.1016/j.cell.2014.05.004
URL : https://doi.org/10.1016/j.cell.2014.05.004
Structural organization of the inactive X chromosome in the mouse, Nature, vol.521, issue.7613, pp.575-579, 2016. ,
DOI : 10.1038/nature14443
The male germ cell gene regulator CTCFL is functionally different from CTCF and binds CTCF-like consensus sites in a nucleosome composition-dependent manner, Epigenetics & Chromatin, vol.5, issue.1, 2012. ,
DOI : 10.1186/1756-8935-5-8
Site-Specific Silencing of Regulatory Elements as a Mechanism of X Inactivation, Cell, vol.151, issue.5, pp.951-963, 2012. ,
DOI : 10.1016/j.cell.2012.10.037
Global survey of escape from X inactivation by RNA-sequencing in mouse, Genome Research, vol.20, issue.5, pp.614-622, 2010. ,
DOI : 10.1101/gr.103200.109
Generation and Application of Mouse-Rat Allodiploid Embryonic Stem Cells, Cell, vol.164, issue.1-2, pp.1-32, 2016. ,
DOI : 10.1016/j.cell.2015.11.035
Mouse genomic variation and its effect on phenotypes and gene regulation, Nature, vol.5, issue.7364, pp.289-294, 2011. ,
DOI : 10.1371/journal.pgen.1000729
URL : http://www.nature.com/nature/journal/v477/n7364/pdf/nature10413.pdf
Late replication in an X-autosome translocation in the mouse: correlation with genetic inactivation and evidence for selective effects during embryogenesis., Proc. Natl Acad. Sci. USA 76, pp.5234-5238, 1979. ,
DOI : 10.1073/pnas.76.10.5234
Two new X-autosome translocations in the mouse, Cytogenetic and Genome Research, vol.35, issue.4, pp.279-292, 1983. ,
DOI : 10.1159/000131880
Spread of X-chromosome inactivation into autosomal sequences: role for DNA elements, chromatin features and chromosomal domains, Human Molecular Genetics, vol.23, issue.5, pp.1211-1223, 2014. ,
DOI : 10.1093/hmg/ddt513
DNA methylation profiling in X;autosome translocations supports a role for L1 repeats in the spread of X chromosome inactivation, Human Molecular Genetics, vol.23, issue.5, pp.1224-1236, 2014. ,
DOI : 10.1093/hmg/ddt553
Chromosome bands, their chromatin flavors, and their functional features, Am. J. Hum. Genet, vol.51, pp.17-37, 1992. ,
Distinctive patterns of epigenetic marks are associated with promoter regions of mouse LINE-1 and LTR retrotransposons, Mobile DNA, vol.4, issue.1, p.27, 2013. ,
DOI : 10.1074/jbc.M501784200
The Mbd1-Atf7ip-Setdb1 pathway contributes to the maintenance of X chromosome inactivation, Epigenetics & Chromatin, vol.7, issue.1, p.12, 2014. ,
DOI : 10.1186/1756-8935-7-12
Setdb1-mediated H3K9 methylation is enriched on the inactive X and plays a role in its epigenetic silencing, Epigenetics & Chromatin, vol.9, issue.1, p.16, 2016. ,
DOI : 10.1038/nmeth.2019
Systematic Discovery of Xist RNA Binding Proteins, Cell, vol.161, issue.2, pp.404-416, 2015. ,
DOI : 10.1016/j.cell.2015.03.025
hnRNP K Coordinates Transcriptional Silencing by SETDB1 in Embryonic Stem Cells, PLOS Genetics, vol.12, issue.1, p.1004933, 2015. ,
DOI : 10.1371/journal.pgen.1004933.s011
URL : https://doi.org/10.1371/journal.pgen.1004933
Spreading of X chromosome inactivation via a hierarchy of defined Polycomb stations, Genome Research, vol.22, issue.10, pp.1864-1876, 2012. ,
DOI : 10.1101/gr.133751.111
Recruiting polycomb to chromatin, The International Journal of Biochemistry & Cell Biology, vol.67, pp.177-187, 2015. ,
DOI : 10.1016/j.biocel.2015.05.006
10.1038/s41467-017-00528-1 ARTICLE, NATURE COMMUNICATIONS NATURE COMMUNICATIONS |, vol.8 ,
URL : https://hal.archives-ouvertes.fr/in2p3-00652853
Jarid2 is implicated in the initial Xist-induced targeting of PRC2 to the inactive X chromosome, Mol. Cell, vol.53, pp.301-316, 2014. ,
Bipartite structure of the inactive mouse X chromosome, Genome Biology, vol.8, issue.1, p.67, 2015. ,
DOI : 10.1371/journal.pone.0075417
Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages, Cell, vol.148, issue.1-2, pp.335-383, 2012. ,
DOI : 10.1016/j.cell.2011.11.058
URL : https://hal.archives-ouvertes.fr/hal-01615154
Evolution of the mammalian transcription factor binding repertoire via transposable elements, Genome Research, vol.18, issue.11, pp.1752-1762, 2008. ,
DOI : 10.1101/gr.080663.108
CTCF-Dependent Chromatin Bias Constitutes Transient Epigenetic Memory of the Mother at the H19-Igf2 Imprinting Control Region in Prospermatogonia, PLoS Genetics, vol.225, issue.11, p.1001224, 2010. ,
DOI : 10.1371/journal.pgen.1001224.s009
CTCF Elements Direct Allele-Specific Undermethylation at the Imprinted H19 Locus, Current Biology, vol.14, issue.11, pp.1007-1012, 2004. ,
DOI : 10.1016/j.cub.2004.05.041
URL : https://doi.org/10.1016/j.cub.2004.05.041
Proteins that bind regulatory regions identified by histone modification chromatin immunoprecipitations and mass spectrometry, Nature Communications, vol.480, p.7155, 2015. ,
DOI : 10.1186/1745-7580-4-5
URL : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4455091/pdf