C. D. Bailey, J. J. Doyle, T. Kajita, T. Nemoto, and H. Ohashi, The Chloroplast rpl2 Intron and ORF184 as Phylogenetic Markers in the Legume Tribe Desmodieae, Systematic Botany, vol.22, issue.1, pp.133-138, 1997.
DOI : 10.2307/2419681

J. Brigham-grette, New perspectives on Beringian Quaternary paleogeography, stratigraphy, and glacial history, Quaternary Science Reviews, vol.20, issue.1-3, pp.15-24, 2001.
DOI : 10.1016/S0277-3791(00)00134-7

URL : https://notendur.hi.is/~oi/AG-326 2006 readings/Beringia and Alaska/A. overview/BrighamGrette_QSR2001a.pdf

A. Bruneau, J. L. Doyle, and J. J. Doyle, Phylogenetic relationships in Phaseoleae: evidence from chloroplast restriction site characters, Advances in Legume Systematics, Part 7: Phylogeny. Royal Botanic Gardens, Kew, pp.309-330, 1995.

J. J. Doyle and J. L. Doyle, Chloroplast DNA Phylogeny of the Papilionoid Legume Tribe Phaseoleae, Systematic Botany, vol.18, issue.2, pp.309-327, 1993.
DOI : 10.2307/2419406

J. J. Doyle, J. L. Doyle, J. A. Ballenge, E. E. Dickson, T. Kajita et al., A Phylogeny of the Chloroplast Gene rbcL in the Leguminosae: Taxonomic Correlations and Insights into the Evolution of Nodulation, American Journal of Botany, vol.84, issue.4, pp.541-554, 1997.
DOI : 10.2307/2446030

J. J. Doyle, A. Chappill, C. D. Bailey, and T. Kajita, Towards a comprehensive phylogeny of legumes: evidence from rbcL sequences and non-molecular data, Advances in Legume Systematics, pp.1-20, 2000.

A. J. Drummond, M. A. Suchard, D. Xie, and A. Rambaut, Bayesian Phylogenetics with BEAUti and the BEAST 1.7, Molecular Biology and Evolution, vol.29, issue.8, pp.1969-1973, 2012.
DOI : 10.1093/molbev/mss075

D. Phon, P. Ohashi, H. Vidal, and J. E. , Leguminosae (Fabaceae), Papilionoideae, Desmodieae, Flore du Cambodge du Laos et du Vietnam 27. Muséum national d'Histoire naturelle, pp.3-154, 1994.

R. C. Edgar, MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Research, vol.32, issue.5, pp.1792-1797, 2004.
DOI : 10.1093/nar/gkh340

URL : https://academic.oup.com/nar/article-pdf/32/5/1792/7055030/gkh340.pdf

A. N. Egan, M. Vatanparast, and W. Cagle, Parsing polyphyletic Pueraria: Delimiting distinct evolutionary lineages through phylogeny, Molecular Phylogenetics and Evolution, vol.104, pp.44-59, 2016.
DOI : 10.1016/j.ympev.2016.08.001

URL : http://thescholarship.ecu.edu/bitstream/10342/4191/1/Cagle_ecu_0600M_11006.pdf

M. F. Fay, S. M. Swensen, and M. W. Chase, Taxonomic Affinities of Medusagyne oppositifolia (Medusagynaceae), Kew Bulletin, vol.52, issue.1, pp.111-120, 1997.
DOI : 10.2307/4117844

S. X. Guo and Z. K. Zhou, The megafossil legumes from China, Advances in Legume Systematics, pp.207-224, 1992.

T. A. Hall, BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95, NT. Nucl. Acids Symp. Ser, vol.98, issue.41, pp.95-98, 1999.

J. E. Han, K. H. Chung, T. Nemoto, and B. H. Choi, Phylogenetic analysis of eastern Asian and eastern North American disjunct Lespedeza (Fabaceae) inferred from nuclear ribosomal ITS and plastid region sequences, Botanical Journal of the Linnean Society, vol.164, issue.3, pp.221-235, 2010.
DOI : 10.1111/j.1095-8339.2010.01084.x

P. Huang, H. Ohashi, Y. Iokawa, and T. Nemoto, Fabaceae, tribe desmodieae, Flora of China, pp.262-311, 2010.

J. M. Hu, M. Lavin, M. F. Wojciechowski, and M. J. Sanderson, Phylogenetic Analysis of nuclear ribosomal ITS/5, 8S sequences in the tribe Millettieae, 2002.

. Poecilanthe-cyclolobium, the core Millettieae, and the Callerya group, Syst. Bot, vol.27, pp.722-733

D. Isely, Native and Naturalised Leguminosae (Fabaceae) of the United States (Exclusive of Alaska and Hawaï), 1998.

T. Kajita, H. Ohashi, T. Nemoto, C. D. Bailey, and J. J. Doyle, Polyphyly of the legume tribe Desmodieae: evidence from the chloroplast genome, Am. J. Bot, vol.83, pp.165-166, 1996.

K. Kajita, H. Ohashi, Y. Tateishi, C. D. Bayley, and J. J. Doyle, RbcL and Legume phylogeny, with particular reference to Phaseoleae, Millettieae, and allies, Syst. Bot, vol.26, pp.515-536, 2001.

E. Käss and M. Wink, Phylogenetic Relationships in the Papilionoideae (Family Leguminosae) Based on Nucleotide Sequences of cpDNA (rbcL) and ncDNA (ITS 1 and 2), Molecular Phylogenetics and Evolution, vol.8, issue.1, pp.65-88, 1997.
DOI : 10.1006/mpev.1997.0410

J. H. Kirkbride, C. R. Gunn, and A. L. Weitzman, Fruits and seeds of genera in the subfamily Faboideae (Fabaceae), U.S. Dep. Agric. Tech. Bull, vol.1890, pp.796-797, 2003.

T. E. Kramina, G. V. Degtjareva, T. H. Samigullin, C. M. Valiejo-roman, J. H. Kirkbride-jr et al., Phylogeny of <I>Lotus</I> (Leguminosae: Loteae): Partial incongruence between nrITS, nrETS and plastid markers and biogeographic implications, Taxon, vol.65, issue.5, pp.997-1018, 2016.
DOI : 10.12705/655.4

M. Lavin, R. T. Pennington, B. B. Klitgaard, J. I. Sprent, H. Cavalcante-de-lima et al., The Dalbergioid Legumes (Fabaceae): Delimitation of a Pantropical Monophyletic Clade, American Journal of Botany, vol.88, issue.3, pp.503-533, 2001.
DOI : 10.2307/2657116

M. Lavin, B. P. Schrire, G. Lewis, R. T. Pennington, A. Delgado-salinas et al., Metacommunity process rather than continental tectonic history better explains geographically structured phylogenies in legumes, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.359, issue.1450, pp.1509-1522, 2004.
DOI : 10.1098/rstb.2004.1536

URL : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1693434/pdf

P. O. Lewis, A Likelihood Approach to Estimating Phylogeny from Discrete Morphological Character Data, Systematic Biology, vol.50, issue.6, pp.913-925, 2001.
DOI : 10.1080/106351501753462876

URL : https://academic.oup.com/sysbio/article-pdf/50/6/913/19502729/50-6-913.pdf

W. P. Maddison and D. R. Maddison, Mesquite: a modular system for evolutionary analysis, 2016.

S. Mcloughlin, The breakup history of Gondwana and its impact on pre-Cenozoic floristic provincialism, Australian Journal of Botany, vol.49, issue.3, pp.271-300, 2001.
DOI : 10.1071/BT00023

T. M. Moura, M. Vatanparast, A. M. Tozzi, F. Forest, C. M. Wilmot-dear et al., Adans. (Leguminosae-Papilionoideae) including Insights from Morphology and Hypotheses about Biogeography, International Journal of Plant Sciences, vol.177, issue.1, pp.76-89, 2016.
DOI : 10.1086/684131

K. Müller, SeqState, Applied Bioinformatics, vol.9, issue.1, pp.65-69, 2005.
DOI : 10.2165/00822942-200504010-00008

Y. Naciri and H. P. Linder, Species delimitation and relationships: The dance of the seven veils, Taxon, vol.64, issue.1, pp.3-16, 2015.
DOI : 10.12705/641.24

R. Nattier, R. Pellens, T. Robillard, H. Jourdan, F. Legendre et al., Updating the Phylogenetic Dating of New Caledonian Biodiversity with a Meta-analysis of the Available Evidence, Scientific Reports, vol.105, issue.366, p.3705, 2017.
DOI : 10.1111/j.1095-8312.2011.01774.x

URL : https://hal.archives-ouvertes.fr/hal-01556842

L. Nauheimer, P. C. Boyce, and S. S. Renner, Giant taro and its relatives: A phylogeny of the large genus Alocasia (Araceae) sheds light on Miocene floristic exchange in the Malesian region, Molecular Phylogenetics and Evolution, vol.63, issue.1, pp.43-51, 2012.
DOI : 10.1016/j.ympev.2011.12.011

T. Nemoto, J. Yokoyama, T. Fukuda, Y. Iokawa, and H. Ohashi, Phylogeny of Lespedeza (Leguminosae) based on chloroplast trnL-trnF sequences, J. Jpn. Bot, vol.85, pp.213-229, 2010.

J. M. Norghauer and D. M. Newbery, Tree size and fecundity influence ballistic seed dispersal of two dominant mast-fruiting species in a tropical rain forest, Forest Ecology and Management, vol.338, pp.100-113, 2015.
DOI : 10.1016/j.foreco.2014.11.005

J. A. Nylander, MrModeltest, Version 2. Program Distributed by the Author, Evolutionary Biology Centre, 2004.

H. Ohashi, The Asiatic species of Desmodium and its allied genera (Leguminosae), Ginkgoana, vol.1, pp.1-318, 1973.

H. Ohashi, R. H. Polhill, and B. G. Schubert, Desmodieae, Advances in Legume Systematics, pp.292-300, 1981.

H. Ohashi, Desmodieae, Legumes of the World, pp.433-445, 2005.

H. Ohashi and T. Nemoto, A new system of Lespedeza (Leguminosae tribe Desmodieae), J. Jap. Bot, vol.89, pp.1-11, 2014.

H. Ohashi and K. Ohashi, Ototropis, a genus separated from Desmodium (Leguminosae), J. Jap. Bot, vol.87, pp.108-118, 2012.

H. Ohashi and K. Ohashi, Verdesmum, a new genus of Leguminosae: tribe Desmodieae, J. Jap. Bot, vol.87, pp.299-306, 2012.

B. Pelletier, Geology of the New Caledonia region and its implications for the study of the New Caledonian biodiversity Compendium of Marine Species of New Caledonia, Documents Scientifiques et Techniques, vol.7, pp.19-32, 2007.

R. M. Polhill, Papilionoideae, Advances in Legume Systematics, pp.191-208, 1981.

L. P. Queiroz, J. F. Pastore, D. Cardoso, C. Snak, A. L. Lima et al., A multilocus phylogenetic analysis reveals the monophyly of a recircumscribed papilionoid legume tribe Diocleae with well-supported generic relationships, Molecular Phylogenetics and Evolution, vol.90, pp.1-19, 2015.
DOI : 10.1016/j.ympev.2015.04.016

J. A. Raveill, Identification of Missouri species of the tribe Desmodieae (Fabaceae) using vegetative characters, pp.14-22, 2006.

R. H. Ree and S. A. Smith, Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis, Systematic Biology, vol.57, issue.1, pp.4-14, 2008.
DOI : 10.1080/10635150701883881

L. H. Rieseberg, J. Whitton, and C. R. Linder, Molecular marker incongruence in plant hybrid zones and phylogenetic trees, Acta Botanica Neerlandica, vol.17, issue.3, pp.243-262, 1996.
DOI : 10.2307/2419732

F. Ronquist, M. Teslenko, P. Van-der-mark, D. Ayres, A. Darling et al., MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space, Systematic Biology, vol.61, issue.3, pp.539-542, 2011.
DOI : 10.1093/sysbio/sys029

T. Sang, D. J. Crawford, and T. F. Stuessy, Chloroplast DNA Phylogeny, Reticulate Evolution, and Biogeography of Paeonia (Paeoniaceae), American Journal of Botany, vol.84, issue.8, pp.1120-1136, 1997.
DOI : 10.2307/2446155

H. Schaefer, P. Hechenleitner, A. Santos-guerra, M. M. De-sequeira, R. T. Pennington et al., Systematics, biogeography, and character evolution of the legume tribe Fabeae with special focus on the middle-Atlantic island lineages, BMC Evolutionary Biology, vol.12, issue.1, p.250, 2012.
DOI : 10.1080/106351501753462876

J. Shaw, E. B. Lickey, J. T. Beck, S. B. Farmer, W. Liu et al., The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis, American Journal of Botany, vol.92, issue.1, pp.142-166, 2005.
DOI : 10.3732/ajb.92.1.142

D. Silvestro and I. Michalak, raxmlGUI: a graphical front-end for RAxML, Organisms Diversity & Evolution, vol.39, issue.4, pp.335-337, 2012.
DOI : 10.1007/BF00160154

M. P. Simmons and H. Ochoterena, Gaps as Characters in Sequence-Based Phylogenetic Analyses, Systematic Biology, vol.49, issue.2, pp.369-381, 2000.
DOI : 10.1093/sysbio/49.2.369

M. F. Simon, R. Grether, L. P. De-queiroz, C. Skema, R. T. Pennington et al., Recent assembly of the Cerrado, a neotropical plant diversity hotspot, by in situ evolution of adaptations to fire, Proc. Natl. Acad. Sci, pp.20359-20364, 2009.
DOI : 10.1098/rspb.1994.0006

J. F. Smith, A. C. Stevens, E. J. Tepe, and C. Davidson, Placing the origin of two species-rich genera in the late cretaceous with later species divergence in the tertiary: a phylogenetic, biogeographic and molecular dating analysis of Piper and Peperomia (Piperaceae), Plant Systematics and Evolution, vol.36, issue.108, pp.9-30, 2008.
DOI : 10.5962/bhl.part.13183

R. W. Spjut, A systematic treatment of fruit types, Mem. N.Y. Bot. Gard, vol.70, pp.1-182, 1994.

A. Stamatakis, RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies, Bioinformatics, vol.30, issue.9, pp.1312-1313, 2014.
DOI : 10.1093/bioinformatics/btu033

S. Stefanovi?, B. E. Pfeil, J. D. Palmer, and J. J. Doyle, Relationships Among Phaseoloid Legumes Based on Sequences from Eight Chloroplast Regions, Systematic Botany, vol.34, issue.1, pp.115-128, 2009.
DOI : 10.1600/036364409787602221

J. A. Tate and B. B. Simpson, Paraphyly of Tarasa (Malvaceae) and diverse origins of the polyploid species, Syst. Bot, vol.28, pp.723-737, 2003.

B. Turner, O. Paun, J. Munzinger, S. Duangjai, M. W. Chase et al., Analyses of amplified fragment length polymorphisms (AFLP) indicate rapid radiation of Diospyros species (Ebenaceae) endemic to New Caledonia, BMC Evolutionary Biology, vol.13, issue.1, p.269, 2013.
DOI : 10.1093/bioinformatics/btm233

T. J. White, T. Bruns, S. Lee, and J. W. Taylor, AMPLIFICATION AND DIRECT SEQUENCING OF FUNGAL RIBOSOMAL RNA GENES FOR PHYLOGENETICS, PCR Protocols: A Guide to Methods and Applications, pp.315-322, 1990.
DOI : 10.1016/B978-0-12-372180-8.50042-1

M. F. Wojciechowski, M. Lavin, and M. J. Sanderson, A phylogeny of legumes (Leguminosae) based on analysis of the plastid matK gene resolves many well-supported subclades within the family, American Journal of Botany, vol.91, issue.11, pp.1846-1862, 2004.
DOI : 10.3732/ajb.91.11.1846

B. Xu, N. Wu, X. F. Gao, and L. B. Zhang, Analysis of DNA sequences of six chloroplast and nuclear genes suggests incongruence, introgression, and incomplete lineage sorting in the evolution of Lespedeza (Fabaceae), Molecular Phylogenetics and Evolution, vol.62, issue.1, pp.346-358, 2012.
DOI : 10.1016/j.ympev.2011.10.007

B. Xu, X. M. Zeng, X. F. Gao, D. P. Jin, and L. B. Zhang, ITS non-concerted evolution and rampant hybridization in the legume genus Lespedeza (Fabaceae), Scientific Reports, vol.145, p.40057, 2017.
DOI : 10.1093/sysbio/sys029

Y. Yu, A. J. Harris, C. Blair, and X. He, RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography, Molecular Phylogenetics and Evolution, vol.87, pp.46-49, 2015.
DOI : 10.1016/j.ympev.2015.03.008