Plankton networks driving carbon export in the oligotrophic ocean, Nature, vol.18, issue.7600, pp.532465-470, 2016. ,
DOI : 10.18637/jss.v018.i02
URL : https://hal.archives-ouvertes.fr/hal-01275276
Present and future global distributions of the marine Cyanobacteria 518, 2013. ,
Multi-locus sequence analysis, taxonomic resolution and biogeography of marine Synechococcus, Environmental Microbiology, vol.10, issue.2, pp.372-524, 2012. ,
DOI : 10.1111/j.1462-2920.2007.01246.x
URL : https://hal.archives-ouvertes.fr/hal-01218506
Co-occurring Synechococcus ecotypes occupy four major oceanic regimes defined by temperature, macronutrients and iron, The ISME Journal, vol.10, issue.2, pp.333-345, 2016. ,
DOI : 10.1111/j.1462-2920.2007.01246.x
URL : http://www.nature.com/ismej/journal/v10/n2/pdf/ismej2015115a.pdf
Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria, Proceedings of the National Academy of Sciences, vol.59, issue.3, pp.3365-3374, 2016. ,
DOI : 10.1111/j.1574-6941.2009.00729.x
URL : https://hal.archives-ouvertes.fr/hal-01331214
Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study, Genome Biology, vol.8, issue.12, pp.259-531, 2007. ,
DOI : 10.1186/gb-2007-8-12-r259
URL : https://hal.archives-ouvertes.fr/hal-00338622
Phycoerythrins of marine unicellular cyanobacteria. I. Bilin types and 534 locations and energy transfer pathways in Synechococcus spp. phycoerythrins, J Biol Chem, vol.535, issue.15, pp.2669515-9527, 1991. ,
Phycobilisome and phycobiliprotein structures. The Molecular Biology of 537, 1994. ,
DOI : 10.1007/0-306-48205-3_7
Advances in Photosynthesis, pp.139-216 ,
A Gene Island with Two Possible Configurations Is Involved in Chromatic Acclimation in Marine Synechococcus, PLoS ONE, vol.6, issue.12, p.84459, 2013. ,
DOI : 10.1371/journal.pone.0084459.s010
URL : https://hal.archives-ouvertes.fr/hal-01218505
Response of microbial community structure to environmental forcing in the Arabian Sea, Deep Sea Research Part II: Topical Studies in Oceanography, vol.45, issue.10-11, pp.2301-2325, 1998. ,
DOI : 10.1016/S0967-0645(98)00072-1
Fluorescence-based characterization of phycoerythrin- 571 containing cyanobacterial communities in the Arabian Sea during the Northeast and early 572, 1999. ,
Distribution of Synechococcus and its phycoerythrin pigment in relation to environmental factors in the East Sea, Korea, Ocean Science Journal, vol.31, issue.4, pp.367-382, 2014. ,
DOI : 10.1007/s00343-013-2085-3
Spatial variability of oceanic 576 phycoerythrin spectral types derived from airborne laser-induced fluorescence emissions, 1998. ,
Water column transparency and the distribution of spectrally distinct forms of phycoerythrin-containing organisms, Marine Ecology Progress Series, vol.162, pp.25-31, 1998. ,
DOI : 10.3354/meps162025
URL : https://hal.archives-ouvertes.fr/hal-01651711
Identification of Synechococcus spp. in the Sargasso Sea by 581 immunofluorescence and fluorescence excitation spectroscopy performed on individual cells, 1988. ,
cyanobacteria in surface waters of the northwestern pacific ocean, Environmental Microbiology, vol.10, issue.1, pp.142-158, 2017. ,
DOI : 10.1128/AEM.01895-15
URL : https://hal.archives-ouvertes.fr/hal-01377154
Variation of Synechococcus pigment genetic diversity along 586 two turbidity gradients in the China Seas, Microb Ecol, pp.1-12, 2017. ,
Synechococcus assemblages across the salinity gradient in a 588 salt wedge estuary Co- 589 occurrence of phycocyanin-and phycoerythrin-rich Synechococcus in subtropical estuarine and 590 coastal waters of Hong Kong: PE-rich and PC-rich Synechococcus in subtropical coastal waters, p.591, 2014. ,
Changes in the Synechococcus Assemblage Composition at the Surface of the East China Sea Due to Flooding of the Changjiang River, Microbial Ecology, vol.414, issue.3, pp.677-688, 2015. ,
DOI : 10.1038/35107050
Colourful coexistence of red and green picocyanobacteria in lakes and seas, Ecology Letters, vol.38, issue.4, pp.290-298, 2007. ,
DOI : 10.1038/316253a0
Clade-Specific 16S Ribosomal DNA Oligonucleotides Reveal the Predominance of a Single Marine Synechococcus Clade throughout a Stratified Water Column in the Red Sea, Applied and Environmental Microbiology, vol.69, issue.5, pp.2430-2443, 2003. ,
DOI : 10.1128/AEM.69.5.2430-2443.2003
Picocyanobacteria containing a novel pigment gene cluster dominate the brackish water Baltic Sea, The ISME Journal, vol.6, issue.9, pp.1892-1903, 2014. ,
DOI : 10.1038/ismej.2011.201
Phylogenetic diversity of Synechococcus in the Chesapeake Bay, p.608, 2004. ,
Phylogenetic diversity of Synechococcus strains isolated from the East, p.611, 2009. ,
Structure and function of the global ocean microbiome, Science, vol.73, issue.16, pp.3481261359-614, 2015. ,
DOI : 10.1128/AEM.00062-07
URL : https://hal.archives-ouvertes.fr/hal-01233742
Metagenomic 16S rDNA Illumina tags are a powerful alternative, p.615, 2014. ,
DOI : 10.1111/1462-2920.12250
URL : https://hal.archives-ouvertes.fr/hal-01258219
Niche dynamics in space and time, Trends in Ecology & Evolution, vol.23, issue.3, p.618, 2008. ,
DOI : 10.1016/j.tree.2007.11.005
Synechococcus in the Atlantic Gateway to the Arctic Ocean, Frontiers in Marine Science, vol.11, 2016. ,
DOI : 10.1111/j.1462-2920.2009.01902.x
Colorful microdiversity of Synechococcus strains (picocyanobacteria) isolated from the Baltic Sea, The ISME Journal, vol.1, issue.4, pp.397-408, 2008. ,
DOI : 10.1111/j.1574-6941.2006.00060.x
Novel Synechococcus genomes reconstructed from freshwater 47 Adaptation to blue light in marine Synechococcus requires MpeU, 626 an enzyme with similarity to phycoerythrobilin lyase isomerases, Front Microbiol, vol.8, pp.243-627, 2017. ,
Cell abundance and fluorescence of picoplankton in relation to growth irradiance and nitrogen availability in the red sea, Netherlands Journal of Sea Research, vol.31, issue.2, pp.135-145, 1993. ,
DOI : 10.1016/0077-7579(93)90003-B
URL : https://hal.archives-ouvertes.fr/hal-01663431
Growth rates of Synechococcus types with different phycoerythrin 630 composition estimated by dual-laser flow cytometry in relationship to the, p.631, 2006. ,
Culture isolation and culture-independent clone libraries reveal 633 new marine Synechococcus ecotypes with distinctive light and N physiologies, Appl Environ, p.634, 2006. ,
DOI : 10.1128/aem.00358-06
URL : http://aem.asm.org/content/72/11/7193.full.pdf
Genetic and ecophysiological traits of Synechococcus strains isolated 636 from coastal and open ocean waters of the Arabian Sea, FEMS Microbiol Ecol, vol.92, issue.11, 2016. ,
Phycoerythrin evolution and diversification of spectral 638 phenotype in marine Synechococcus and related picocyanobacteria, Mol Phylogenet Evol, vol.639, issue.3, pp.64381-392, 2012. ,
Optical properties of the ???clearest??? natural waters, Limnology and Oceanography, vol.52, issue.1, pp.52217-229, 2007. ,
DOI : 10.4319/lo.2007.52.1.0217
Occurrence of phosphate acquisition genes in 646, 2009. ,
Phosphate acquisition genes in Prochlorococcus ecotypes: Evidence for genome-wide adaptation, Proceedings of the National Academy of Sciences, vol.104, issue.1, pp.12552-12557, 2006. ,
DOI : 10.1029/1998JC900011
Widespread metabolic potential for nitrite and nitrate assimilation among Prochlorococcus ecotypes, Proceedings of the National Academy of Sciences, vol.26, issue.33, pp.10787-651, 2009. ,
DOI : 10.1111/j.1574-6968.1985.tb01559.x
URL : http://www.pnas.org/content/106/26/10787.full.pdf
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0, Systematic Biology, vol.174, issue.3, pp.307-321, 2010. ,
DOI : 10.1093/bioinformatics/17.4.383
URL : https://hal.archives-ouvertes.fr/lirmm-00511784
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data, Molecular Biology and Evolution, vol.155, issue.1, pp.1635-1638, 2016. ,
DOI : 10.1093/molbev/msi237
URL : https://academic.oup.com/mbe/article-pdf/33/6/1635/7953632/msw046.pdf
BLAST+: architecture and applications, BMC Bioinformatics, vol.10, issue.1, pp.421-659, 2009. ,
DOI : 10.1186/1471-2105-10-421
URL : https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-10-421?site=bmcbioinformatics.biomedcentral.com
pplacer: linear time maximum, p.660, 2010. ,
cluster: cluster analysis basics 665 and extensions, p.666, 2017. ,
Modern applied statistics with S Fourth 667 edition Available at, 2002. ,
DOI : 10.1007/978-0-387-21706-2
Hmisc: Harrell Miscellaneous Available at, 2016. ,