L. Trinkle-mulcahy and A. I. Lamond, Toward a high-resolution view of nuclear dynamics. Science, vol.318, p.18048679, 2007.

R. Schneider and R. Grosschedl, Dynamics and interplay of nuclear architecture, genome organization, and gene expression, Genes Dev, vol.21, issue.23, p.18056419, 2007.

M. Fromont-racine, B. Senger, C. Saveanu, and F. Fasiolo, Ribosome assembly in eukaryotes, Gene, vol.313, p.12957375, 2003.
URL : https://hal.archives-ouvertes.fr/pasteur-01404699

L. Breci, E. Hattrup, M. Keeler, J. Letarte, R. Johnson et al., Comprehensive proteomics in yeast using chromatographic fractionation, gas phase fractionation, protein gel electrophoresis, and isoelectric focusing, Proteomics, vol.5, issue.8, p.15852344, 2005.

M. Gama-carvalho and M. Carmo-fonseca, The rules and roles of nucleocytoplasmic shuttling proteins, FEBS Lett, vol.498, issue.2-3, p.11412848, 2001.

E. Lasonder, Y. Ishihama, J. S. Andersen, A. Vermunt, A. Pain et al., Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry, Nature, vol.419, issue.6906, p.12368870, 2002.

L. Florens, M. P. Washburn, J. D. Raine, R. M. Anthony, M. Grainger et al., A proteomic view of the Plasmodium falciparum life cycle, Nature, vol.419, issue.6906, p.12368866, 2002.

E. Lasonder, C. J. Janse, G. Van-gemert, G. R. Mair, A. Vermunt et al., Proteomic profiling of Plasmodium sporozoite maturation identifies new proteins essential for parasite development and infectivity, PLoS Pathog, vol.4, issue.10, p.18974882, 2008.

P. Sims and J. E. Hyde, Proteomics of the human malaria parasite Plasmodium falciparum, Expert Rev Proteomics, vol.3, issue.1, p.16445353, 2006.

M. Khosh-naucke, J. Becker, P. Mesé-n-ramírez, P. Kiani, J. Birnbaum et al., Identification of novel parasitophorous vacuole proteins in P. falciparum parasites using BioID, Int J Med Microbiol, 2017.

S. Antwi-baffour, J. K. Adjei, F. Agyemang-yeboah, M. Annani-akollor, R. Kyeremeh et al., Proteomic analysis of microparticles isolated from malaria positive blood samples, Proteome Sci, vol.15, p.28352210, 2016.

A. K. Cruz, J. S. Toledo, . De, M. Falade, M. C. Terrao et al., Current Treatment and Drug Discovery Against Leishmania spp. and Plasmodium spp.: A Review

, Current Drug Targets, 2009.

S. C. Oehring, B. J. Woodcroft, S. Moes, J. Wetzel, O. Dietz et al., Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum, Genome Biol, vol.13, issue.11, p.23181666, 2012.

G. Yusupova and M. Yusupov, High-resolution structure of the eukaryotic 80S ribosome, Annu Rev Biochem, vol.83, p.24580643, 2014.

J. E. Dahlberg, E. Lund, and E. B. Goodwin, Nuclear translation: what is the evidence? RNA, vol.9, p.12554869, 2003.

J. Bernardes, C. Vaquero, and A. Carbone, Plasmobase: a comparative database of predicted domain architectures for Plasmodium genomes, Malar J, vol.16, issue.1, p.28592293, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01556734

J. Bernardes, G. Zaverucha, C. Vaquero, and A. Carbone, Improvement in Protein Domain Identification Is Reached by Breaking Consensus, with the Agreement of Many Profiles and Domain Co-occurrence
URL : https://hal.archives-ouvertes.fr/hal-01390566

, PLoS Comput Biol, vol.12, issue.7, p.27472895, 2016.

W. Trager and J. B. Jensen, Human Malaria Parasites in Continuous Culture, Journal of Parasitology, vol.91, issue.3, pp.484-490, 2005.

M. Osta, L. Gannoun-zaki, S. Bonnefoy, C. Roy, and H. J. Vial, A 24 bp cis-acting element essential for the transcriptional activity of Plasmodium falciparum CDP-diacylglycerol synthase gene promoter, Mol Biochem Parasitol, vol.121, issue.1, p.11985865, 2002.
URL : https://hal.archives-ouvertes.fr/hal-02281916

N. Wang and L. Li, Exploring the precursor ion exclusion feature of liquid chromatography-electrospray ionization quadrupole time-of-flight mass spectrometry for improving protein identification in shotgun proteome analysis, Anal Chem, vol.80, issue.12, p.18479145, 2008.

Z. Zhang, Automated precursor ion exclusion during LC-MS/MS data acquisition for optimal ion identification, J Am Soc Mass Spectrom, vol.23, issue.8, p.22669759, 2012.

P. D. Thomas, A. Kejariwal, M. J. Campbell, H. Mi, K. Diemer et al., PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification, Nucleic Acids Res, vol.31, issue.1, p.12520017, 2003.

E. Bischoff and C. Vaquero, In silico and biological survey of transcription-associated proteins implicated in the transcriptional machinery during the erythrocytic development of Plasmodium falciparum, BMC Genomics, vol.11, p.34, 2010.
URL : https://hal.archives-ouvertes.fr/pasteur-00663529

Z. Bozdech, M. Lliná-s, B. L. Pulliam, E. D. Wong, J. Zhu et al., The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum, PLoS Biol, vol.1, issue.1, p.12929205, 2003.

, Nomenclature of initiation, elongation and termination factors for translation in eukaryotes. Recommendations 1988. Nomenclature Committee of the International Union of Biochemistry (NC-IUB), Eur J Biochem, vol.186, issue.1-2, p.2598922, 1989.

M. Yoshihama, T. Uechi, S. Asakawa, K. Kawasaki, S. Kato et al., The human ribosomal protein genes: sequencing and comparative analysis of 73 genes, Genome Res, vol.12, issue.3, p.11875025, 2002.

V. G. Panse and A. W. Johnson, Maturation of Eukaryotic Ribosomes: Acquisition of Functionality, Trends Biochem Sci, vol.35, issue.5, p.20137954, 2010.

D. Xia, S. J. Sanderson, A. R. Jones, J. H. Prieto, J. R. Yates et al., The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation

, Genome Biol, vol.9, issue.7, p.18644147, 2008.

T. F. Mccutchan, J. Li, G. A. Mcconkey, M. J. Rogers, and A. P. Waters, The cytoplasmic ribosomal RNAs of Plasmodium spp, Parasitol Today, vol.11, issue.4, pp.134-142, 1995.

B. J. Foth, N. Zhang, B. K. Chaal, S. K. Sze, P. R. Preiser et al., Quantitative time-course profiling of parasite and host cell proteins in the human malaria parasite Plasmodium falciparum, Mol Cell Proteomics, vol.10, issue.8, 2011.

S. S. Vembar, D. Droll, and A. Scherf, Translational regulation in blood stages of the malaria parasite Plasmodium spp.: systems-wide studies pave the way, Wiley Interdiscip Rev RNA, vol.7, issue.6, p.27230797, 2016.

K. E. Jackson, S. Habib, M. Frugier, R. Hoen, S. Khan et al., Protein translation in Plasmodium parasites, Trends Parasitol, vol.27, issue.10, p.21741312, 2011.

C. Boschet, M. Gissot, S. Briquet, Z. Hamid, C. Claudel-renard et al., Characterization of PfMyb1 transcription factor during erythrocytic development of 3D7 and F12 Plasmodium falciparum clones

, Mol Biochem Parasitol, vol.138, issue.1, p.15500927, 2004.

M. Gissot, S. Briquet, P. Refour, C. Boschet, and C. Vaquero, PfMyb1, a Plasmodium falciparum transcription factor, is required for intra-erythrocytic growth and controls key genes for cell cycle regulation, J Mol Biol, vol.346, issue.1, p.15663925, 2005.