D. De-vos, D. Grain, M. Miquel, J. Thévenin, and A. , To for their valuable support to the work presented. Embryogenesis by LEAFY COTYLEDON2 and FUSCA3 in Arabidopsis, Plant Physiol, pp.104-047266

D. 'ario, M. Griffiths-jones, S. , K. , and M. , Small RNAs: Big Impact on Plant Development, Trends Plant Sci, 2017.

S. Dean-rider, . Jr, J. T. Henderson, R. E. Jerome, H. J. Edenberg et al., Coordinate repression of regulators of embryonic identity by PICKLE during germination in Arabidopsis, Plant J, vol.35, pp.33-43, 2003.

F. Delmas, S. Sankaranarayanan, S. Deb, E. Widdup, C. Bournonville et al., ABI3 controls embryo degreening through Mendel's I locus, Proc. Natl. Acad. Sci. USA, vol.110, pp.3888-3894, 2013.

W. Deng, D. M. Buzas, H. Ying, M. Robertson, J. Taylor et al., Arabidopsis Polycomb Repressive Complex 2 binding sites contain putative GAGA factor binding motifs within coding regions of genes, BMC Genomics, vol.14, p.593, 2013.

M. Derkacheva and L. Hennig, Variations on a theme: Polycomb group proteins in plants, J Exp Bot, vol.65, pp.2769-2784, 2014.

M. Derkacheva, Y. Steinbach, T. Wildhaber, I. Mozgova, W. Mahrez et al., Arabidopsis MSI1 connects LHP1 to PRC2 complexes, EMBO J, vol.32, pp.2073-2085, 2013.

M. Devic, R. , and T. , Seed maturation: Simplification of control networks in plants, Plant Sci, vol.252, pp.335-346, 2016.

Z. J. Ding, J. Y. Yan, G. X. Li, Z. C. Wu, S. Q. Zhang et al., WRKY41 controls Arabidopsis seed dormancy via direct regulation of ABI3 transcript levels not downstream of ABA, Plant J, vol.79, pp.810-823, 2014.

S. Duong, E. Vonapartis, C. Y. Li, S. Patel, and S. Gazzarrini, The E3 ligase ABI3INTERACTING PROTEIN2 negatively regulates FUSCA3 and plays a role in cotyledon development in Arabidopsis thaliana, J Exp Bot, vol.68, pp.1555-1567, 2017.

H. Ettaki, M. A. Troncoso-ponce, A. To, G. Barthole, L. Lepiniec et al., Overexpression of MYB115, AAD2, or AAD3 in Arabidopsis thaliana seeds yields contrasting omega-7 contents, PLoS One, vol.13, 2018.

A. Fatihi, C. Boulard, D. Bouyer, S. Baud, B. Dubreucq et al., Deciphering and modifying LAFL transcriptional regulatory network in seed for improving yield and quality of storage compounds, Plant Sci, vol.250, pp.198-204, 2016.

M. Feeney, L. Frigerio, Y. Cui, and R. Menassa, Following vegetative to embryonic cellular changes in leaves of Arabidopsis overexpressing LEAFY COTYLEDON2, Plant Physiol, vol.162, pp.1881-1896, 2013.

C. Z. Feng, Y. Chen, C. Wang, Y. H. Kong, W. H. Wu et al., Arabidopsis RAV1 transcription factor, phosphorylated by SnRK2 kinases, regulates the expression of ABI3, ABI4, and ABI5 during seed germination and early seedling development, Plant J, vol.80, pp.654-668, 2014.

J. Feng, D. Chen, A. Berr, and W. H. Shen, ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development, Plant Physiol, vol.172, pp.1746-1759, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01395113

A. P. Gagete, M. Riera, L. Franco, R. , and M. I. , Functional analysis of the isoforms of an ABI3-like factor of Pisum sativum generated by alternative splicing, J Exp Bot, vol.60, pp.1703-1714, 2009.

M. Gaj, S. Zhang, J. Harada, and P. Lemaux, Leafy cotyledon genes are essential for induction of somatic embryogenesis of <i>Arabidopsis</i>, Planta, vol.222, pp.977-988, 2005.

M. J. Gao, D. J. Lydiate, X. Li, H. Lui, B. Gjetvaj et al., Repression of seed maturation genes by a trihelix transcriptional repressor in Arabidopsis seedlings, Plant Cell, vol.21, pp.54-71, 2009.

M. J. Gao, X. Li, J. Huang, G. M. Gropp, B. Gjetvaj et al., SCARECROW-LIKE15 interacts with HISTONE DEACETYLASE19 and is essential for repressing the seed maturation programme, Nat Commun, vol.6, p.7243, 2015.

Y. Gao, J. Liu, Z. Zhang, X. Sun, N. Zhang et al., Functional characterization of two alternatively spliced transcripts of tomato ABSCISIC ACID INSENSITIVE3 (ABI3) gene, Plant Mol Biol, vol.82, pp.131-145, 2013.

A. Gaudinier, M. Tang, A. M. Bagman, and S. M. Brady, Identification of Protein-DNA Interactions Using Enhanced Yeast One-Hybrid Assays and a Semiautomated Approach, Methods Mol Biol, vol.1610, pp.187-215, 2017.

A. Gaudinier, L. Zhang, J. S. Reece-hoyes, M. Taylor-teeples, L. Pu et al., , 2011.

, Enhanced Y1H assays for Arabidopsis, Nat Methods, vol.8, pp.1053-1055

S. Gazzarrini, Y. Tsuchiya, S. Lumba, M. Okamoto, and P. Mccourt, The transcription factor FUSCA3 controls developmental timing in Arabidopsis through the hormones gibberellin and abscisic acid, Dev.Cell, pp.373-385, 2004.

J. Gil and A. Loghlen, PRC1 complex diversity: where is it taking us?, Trends Cell Biol, vol.24, pp.632-641, 2014.

J. Giraudat, B. M. Hauge, C. Valon, J. Smalle, F. Parcy et al., Isolation of the Arabidopsis ABI3 gene by positional cloning, Plant Cell, vol.4, pp.1251-1261, 1992.

N. Gnesutta, D. Saad, A. Chaves-sanjuan, R. Mantovani, and M. Nardini, Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants, Mol Plant, vol.10, pp.645-648, 2017.

T. A. Golden, S. E. Schauer, J. D. Lang, S. Pien, A. R. Mushegian et al., Short Integuments1/suspensor1/carpel Factory, a Dicer Homolog, Is a Maternal Effect Gene Required for Embryo Development in Arabidopsis, Plant Physiol, vol.130, pp.808-822, 2002.

S. I. Gonzalez-morales, R. A. Chavez-montes, C. Hayano-kanashiro, G. Alejo-jacuinde, T. Y. Ricocambron et al., Regulatory network analysis reveals novel regulators of seed desiccation tolerance in Arabidopsis thaliana, Proc Natl Acad Sci U S A, vol.113, pp.5232-5241, 2016.

A. Grimault, G. Gendrot, S. Chaignon, F. Gilard, G. Tcherkez et al., Role of B3 domain transcription factors of the AFL family in maize kernel filling, Plant Sci, vol.236, pp.116-125, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01204180

F. Guo, C. Liu, H. Xia, Y. Bi, C. Zhao et al., Induced expression of AtLEC1 and AtLEC2 differentially promotes somatic embryogenesis in transgenic tobacco plants, PLoS One, vol.8, 2013.

R. Gutzat, L. Borghi, J. Futterer, S. Bischof, Y. Laizet et al., RETINOBLASTOMA-RELATED PROTEIN controls the transition to autotrophic plant development, Development, vol.138, pp.2977-2986, 2011.

S. K. Han, M. F. Wu, S. Cui, and D. Wagner, Roles and activities of chromatin remodeling ATPases in plants, Plant J, vol.83, pp.62-77, 2015.

J. J. Harada and J. Pelletier, Genome-wide analyses of gene activity during seed development, Seed Science Research, vol.22, pp.15-22, 2012.

A. Hecker, L. H. Brand, S. Peter, N. Simoncello, J. Kilian et al., The Arabidopsis GAGA-Binding Factor BASIC PENTACYSTEINE6 Recruits the POLYCOMB-REPRESSIVE COMPLEX1 Component LIKE HETEROCHROMATIN PROTEIN1 to GAGA DNA Motifs, Plant Physiol, vol.168, pp.1013-1024, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01536439

J. T. Henderson, H. Li, S. D. Rider, A. P. Mordhorst, J. Romero-severson et al., PICKLE Acts throughout the Plant to Repress Expression of Embryonic Traits and May Play a Role in Gibberellin-Dependent Responses, Plant Physiol, vol.134, pp.995-1005, 2004.

K. K. Ho, H. Zhang, B. L. Golden, and J. Ogas, PICKLE is a CHD subfamily II ATPdependent chromatin remodeling factor, Biochim Biophys Acta, vol.1829, pp.199-210, 2013.

A. Horstman, M. Li, I. Heidmann, M. Weemen, B. Chen et al., The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3LEC2 Network to Induce Somatic Embryogenesis, vol.175, pp.848-857, 2017.

X. Hou, J. Zhou, C. Liu, L. Liu, L. Shen et al., Nuclear factor Y-mediated H3K27me3 demethylation of the SOC1 locus orchestrates flowering responses of Arabidopsis, Nature Communications, vol.5, p.4601, 2014.

M. Huang, Y. Hu, X. Liu, Y. Li, and X. Hou, Arabidopsis leafy cotyledon1 mediates postembryonic development via interacting with phytochrome-interacting factor4, Plant Cell, vol.27, pp.3099-3111, 2015.

M. Huang, Y. Hu, X. Liu, Y. Li, and X. Hou, Arabidopsis LEAFY COTYLEDON1 controls cell fate determination during post-embryonic development, Front Plant Sci, vol.6, p.955, 2015.

M. Ikeuchi, A. Iwase, B. Rymen, H. Harashima, M. Shibata et al., PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nat Plants 1, p.15089, 2015.

A. Iwase, K. Mita, S. Nonaka, M. Ikeuchi, C. Koizuka et al., WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed, J Plant Res, vol.128, pp.389-397, 2015.

H. Jia, D. R. Mccarty, and M. Suzuki, Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression, Plant Physiol, vol.163, pp.1293-1305, 2013.

H. Jia, M. Suzuki, and D. R. Mccarty, Regulation of the seed to seedling developmental phase transition by the LAFL and VAL transcription factor networks, Interdiscip. Rev. Dev. Biol, vol.3, pp.135-145, 2014.

Y. Jing, D. Zhang, X. Wang, W. Tang, W. Wang et al., Arabidopsis chromatin remodeling factor PICKLE interacts with transcription factor HY5 to regulate hypocotyl cell elongation, Plant Cell, vol.25, pp.242-256, 2013.

A. Junker and H. Baumlein, Multifunctionality of the LEC1 transcription factor during plant development, Plant Signal Behav, vol.7, pp.1718-1720, 2012.

A. Junker, G. Monke, T. Rutten, J. Keilwagen, M. Seifert et al., Elongation-related functions of LEAFY COTYLEDON1 during the development of Arabidopsis thaliana, Plant J, vol.71, pp.427-442, 2012.

Y. Kanno, Y. Jikumaru, A. Hanada, E. Nambara, S. R. Abrams et al., Comprehensive hormone profiling in developing Arabidopsis seeds: examination of the site of ABA biosynthesis, ABA transport and hormone interactions, Plant Cell Physiol, vol.51, 1988.

T. Kawakatsu, J. R. Nery, R. Castanon, and J. R. Ecker, Dynamic DNA methylation reconfiguration during seed development and germination, Genome Biol, vol.18, p.171, 2017.
DOI : 10.1186/s13059-017-1251-x

URL : https://genomebiology.biomedcentral.com/track/pdf/10.1186/s13059-017-1251-x?site=genomebiology.biomedcentral.com

T. Kawashima and F. Berger, Epigenetic reprogramming in plant sexual reproduction, Nat Rev Genet, vol.15, pp.613-624, 2014.
DOI : 10.1038/nrg3685

URL : https://www.nature.com/articles/nrg3685.pdf

K. Keith, M. Kraml, N. G. Dengler, and P. Mccourt, fusca3: A Heterochronic Mutation Affecting Late Embryo Development in Arabidopsis, Plant Cell, vol.6, pp.589-600, 1994.
DOI : 10.1105/tpc.6.5.589

URL : http://www.plantcell.org/content/6/5/589.full.pdf

G. Kelsey, O. Stegle, R. , and W. , Single-cell epigenomics: Recording the past and predicting the future, Science, vol.358, pp.69-75, 2017.
DOI : 10.1126/science.aan6826

URL : http://science.sciencemag.org/content/sci/358/6359/69.full.pdf

D. Kim, Y. H. Cho, H. Ryu, Y. Kim, T. H. Kim et al., BLH1 and KNAT3 modulate ABA responses during germination and early seedling development in Arabidopsis, Plant J, vol.75, pp.755-766, 2013.
DOI : 10.1111/tpj.12236

URL : https://onlinelibrary.wiley.com/doi/pdf/10.1111/tpj.12236

S. Y. Kim, J. Lee, L. Eshed-williams, D. Zilberman, Z. R. Sung et al., Arabidopsis RETINOBLASTOMA-RELATED and Polycomb group proteins: cooperation during plant cell differentiation and development, PLoS Genet, vol.8, pp.2667-2676, 2012.

R. W. Kwong, A. Q. Bui, H. Lee, L. W. Kwong, R. L. Fischer et al., LEAFY COTYLEDON1-LIKE Defines a Class of Regulators Essential for Embryo Development, Plant Cell, vol.15, pp.5-18, 2003.
DOI : 10.1105/tpc.006973

URL : http://www.plantcell.org/content/15/1/5.full.pdf

P. Lara, L. Oñate-sànchez, Z. Abraham, C. Ferrándiz, I. Díaz et al., Synergistic activation of seed storage protein gene expression in Arabidopsis by ABI3 and two bZIPs related to OPAQUE2, J. Biol. Chem, pp.21003-21011, 2003.

K. Lee and P. J. Seo, Dynamic Epigenetic Changes during Plant Regeneration, Trends Plant Sci, vol.23, pp.235-247, 2018.
DOI : 10.1016/j.tplants.2017.11.009

J. I. Questa, J. Song, N. Geraldo, H. An, D. et al., Arabidopsis transcriptional repressor VAL1 triggers Polycomb silencing at FLC during vernalization, Science, vol.353, pp.485-488, 2016.

E. Ramirez-parra and C. Gutierrez, The many faces of chromatin assembly factor 1, Trends Plant Sci, vol.12, pp.570-576, 2007.

V. Raz, J. H. Bergervoet, and M. Koornneef, Sequential steps for developmental arrest in Arabidopsis seeds, Development, vol.128, pp.243-252, 2001.

L. Ringrose, P. , and R. , Polycomb/Trithorax response elements and epigenetic memory of cell identity, Development, vol.134, pp.223-232, 2007.
DOI : 10.1242/dev.02723

URL : http://dev.biologists.org/content/134/2/223.full.pdf

A. S. Rodrigues, M. , and C. M. , The pivotal role of small non-coding RNAs in the regulation of seed development, Plant Cell Rep, vol.36, pp.653-667, 2017.

T. T. Roscoe, J. Guilleminot, J. J. Bessoule, F. Berger, and M. Devic, Complementation of Seed Maturation Phenotypes by Ectopic Expression of ABSCISIC ACID INSENSITIVE3, FUSCA3 and LEAFY COTYLEDON2 in Arabidopsis, Plant Cell Physiol, vol.56, pp.1215-1228, 2015.

H. Ryu, H. Cho, W. Bae, and I. Hwang, Control of early seedling development by BES1/TPL/HDA19-mediated epigenetic regulation of ABI3, Nat Commun, vol.5, p.4138, 2014.

K. Sakai, L. Taconnat, N. Borrega, J. Yansouni, V. Brunaud et al., Combining laser-assisted microdissection (LAM) and RNA-seq allows to perform a comprehensive transcriptomic analysis of epidermal cells of Arabidopsis embryo, Plant Methods, vol.14, p.10, 2018.

S. Mendoza, M. Dubreucq, B. Miquel, M. Caboche, M. Lepiniec et al., LEAFY COTYLEDON 2 activation is sufficient to trigger the accumulation of oil and seed specific mRNAs in Arabidopsis leaves, FEBS Lett, vol.579, pp.4666-4670, 2005.

M. Santos-mendoza, B. Dubreucq, S. Baud, F. Parcy, M. Caboche et al., Deciphering gene regulatory networks that control seed development and maturation in Arabidopsis, Plant J, vol.54, pp.608-620, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00297574

A. Schneider, D. Aghamirzaie, H. Elmarakeby, A. N. Poudel, A. J. Koo et al., Potential targets of VIVIPAROUS1/ABI3-LIKE1 (VAL1) repression in developing Arabidopsis thaliana embryos, Plant J, vol.85, pp.305-319, 2016.

W. F. Seefried, M. R. Willmann, R. L. Clausen, J. , and P. D. , Global Regulation of Embryonic Patterning in Arabidopsis by MicroRNAs, Plant Physiol, vol.165, pp.670-687, 2014.

P. Serivichyaswat, H. S. Ryu, W. Kim, S. Kim, K. S. Chung et al., Expression of the floral repressor miRNA156 is positively regulated by the AGAMOUS-like proteins AGL15 and AGL18, Mol Cells, vol.38, pp.259-266, 2015.

Y. Shen, M. Devic, L. Lepiniec, and D. X. Zhou, Chromodomain, Helicase and DNAbinding CHD1 protein, CHR5, are involved in establishing active chromatin state of seed maturation genes, Plant Biotechnol J, vol.13, pp.811-820, 2015.

P. Sijacic, M. Bajic, E. C. Mckinney, R. B. Meagher, and R. B. Deal, Chromatin accessibility changes between Arabidopsis stem cells and mesophyll cells illuminate cell typespecific transcription factor networks, The Plant Journal in press, 2018.

N. Sreenivasulu and U. Wobus, Seed-development programs: a systems biology-based comparison between dicots and monocots, Annu Rev Plant Biol, vol.64, pp.189-217, 2013.

A. K. Srivastava, Y. Lu, G. Zinta, Z. Lang, and J. Zhu, UTR-Dependent Control of Gene Expression in Plants, Trends in Plant Science, vol.23, pp.248-259, 2018.

S. L. Stone, L. W. Kwong, K. M. Yee, J. Pelletier, L. Lepiniec et al., LEAFY COTYLEDON2 encodes a B3 domain transcription factor that induces embryo development, PNAS, vol.98, pp.11806-11811, 2001.

S. L. Stone, S. A. Braybrook, S. L. Paula, L. W. Kwong, J. Meuser et al., Arabidopsis LEAFY COTYLEDON2 induces maturation traits and auxin activity: Implications for somatic embryogenesis, Proc Natl Acad Sci U S A, vol.105, pp.3151-3156, 2008.

M. Sugliani, V. Brambilla, E. J. Clerkx, M. Koornneef, and W. J. Soppe, The conserved splicing factor SUA controls alternative splicing of the developmental regulator ABI3 in Arabidopsis, Plant Cell, vol.22, pp.1936-1946, 2010.

F. Sun, X. Liu, Q. Wei, J. Liu, T. Yang et al., Functional Characterization of TaFUSCA3, a B3-Superfamily Transcription Factor Gene in the Wheat, Front Plant Sci, vol.8, p.1133, 2017.

M. Suzuki and D. R. Mccarty, Functional symmetry of the B3 network controlling seed development, Curr Op Plant Biol, vol.11, pp.548-553, 2008.

M. Suzuki, H. H. Wang, and D. R. Mccarty, Repression of the LEAFY COTYLEDON 1/B3 regulatory network in plant embryo development by VP1/ABSCISIC ACID INSENSITIVE 3-LIKE B3 genes, Plant Physiol, vol.143, pp.902-911, 2007.

S. Swain, Z. A. Myers, C. L. Siriwardana, and B. F. Holt, The multifaceted roles of NUCLEAR FACTOR-Y in Arabidopsis thaliana development and stress responses, Biochim Biophys Acta, vol.1860, pp.636-644, 2017.

K. Swaminathan, K. Peterson, J. , and T. , The plant B3 superfamily, Trends Plant Sci, vol.13, pp.647-655, 2008.

T. Tan, Y. Sun, X. Peng, G. Wu, F. Bao et al., ABSCISIC ACID INSENSITIVE3 Is Involved in Cold Response and Freezing Tolerance Regulation in Physcomitrella patens, Front Plant Sci, vol.8, p.1599, 2017.

M. Tanaka, A. Kikuchi, and H. Kamada, The Arabidopsis histone deacetylases HDA6 and HDA19 contribute to the repression of embryonic properties after germination, Plant Physiol, vol.146, pp.149-161, 2008.

L. P. Tang, C. Zhou, S. S. Wang, J. Yuan, X. S. Zhang et al., FUSCA3 interacting with LEAFY COTYLEDON2 controls lateral root formation through regulating YUCCA4 gene expression in Arabidopsis thaliana, New Phytol, vol.213, pp.1740-1754, 2017.

X. Tang, M. H. Lim, J. Pelletier, M. Tang, V. Nguyen et al., Synergistic repression of the embryonic programme by SET DOMAIN GROUP 8 and EMBRYONIC FLOWER 2 in Arabidopsis seedlings, J Exp Bot, vol.63, pp.1391-1404, 2012.

X. Tang, A. Hou, M. Babu, V. Nguyen, L. Hurtado et al., The Arabidopsis BRAHMA chromatinremodeling ATPase is involved in repression of seed maturation genes in leaves, Plant Physiol, vol.147, pp.1143-1157, 2008.

X. Tang, S. Bian, M. Tang, Q. Lu, S. Li et al., MicroRNA-mediated repression of the seed maturation program during vegetative development in Arabidopsis, Nature, vol.551, pp.124-128, 2012.

A. To, C. Valon, G. Savino, J. Guilleminot, M. Devic et al., A network of local and redundant gene regulation governs Arabidopsis seed maturation, Plant Cell, vol.18, pp.1642-1651, 2006.
URL : https://hal.archives-ouvertes.fr/hal-00164401

I. Trindade, D. Schubert, and V. Gaudin, Epigenetic Regulation of Phase Transitions in Arabidopsis thaliana, pp.359-383, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01606905

M. A. Troncoso-ponce, G. Barthole, G. Tremblais, A. To, M. Miquel et al., Transcriptional Activation of Two Delta-9 Palmitoyl-ACP Desaturase Genes by MYB115 and MYB118 Is Critical for Biosynthesis of Omega-7 Monounsaturated Fatty Acids in the Endosperm of Arabidopsis Seeds, Plant Cell, vol.28, pp.2666-2682, 2016.

A. Y. Tsai and S. Gazzarrini, AKIN10 and FUSCA3 interact to control lateral organ development and phase transitions in Arabidopsis, Plant J, vol.69, pp.809-821, 2012.

Y. Tsuchiya, E. Nambara, S. Naito, and P. Mccourt, The FUS3 transcription factor functions through the epidermal regulator TTG1 during embryogenesis in Arabidopsis, Plant J, vol.37, pp.73-81, 2004.

H. Tsukagoshi, A. Morikami, and K. Nakamura, Two B3 domain transcriptional repressors prevent sugar-inducible expression of seed maturation genes in Arabidopsis seedlings, Proc. Natl. Acad. Sci. USA, vol.104, pp.2543-2547, 2007.

H. Tsukagoshi, T. Saijo, D. Shibata, A. Morikami, and K. Nakamura, Analysis of a Sugar Response Mutant of Arabidopsis Identified a Novel B3 Domain Protein That Functions as an Active Transcriptional Repressor, Plant Physiol, vol.138, pp.675-685, 2005.

F. Turck, F. Roudier, S. Farrona, M. L. Martin-magniette, E. Guillaume et al., Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27, PLoS Genet, vol.3, pp.475-488, 2007.

D. Vashisht and M. D. Nodine, MicroRNA functions in plant embryos, Biochem Soc Trans, vol.42, pp.352-357, 2014.

V. Veerappan, N. Chen, A. I. Reichert, A. , and R. D. , HSI2/VAL1 PHD-like domain promotes H3K27 trimethylation to repress the expression of seed maturation genes and complex transgenes in Arabidopsis seedlings, BMC Plant Biol, vol.14, p.293, 2014.

V. Veerappan, J. Wang, M. Kang, J. Lee, Y. Tang et al., A novel HSI2 mutation in Arabidopsis affects the PHD-like domain and leads to derepression of seed-specific gene expression, Planta, vol.236, pp.1-17, 2012.

J. Verdier and R. D. Thompson, Transcriptional regulation of storage protein synthesis during dicotyledon seed filling, Plant Cell Physiol, vol.49, pp.1263-1271, 2008.

J. Vicente-carbajosa, C. , and P. , Seed maturation: developing an intrusive phase to accomplish a quiescent state, Int J Dev Biol, vol.49, pp.645-651, 2005.

F. Wang, P. , and S. E. , Identification of direct targets of FUSCA3, a key regulator of Arabidopsis seed development, Plant Physiol, vol.161, pp.1251-1264, 2013.

H. Wang, L. V. Caruso, A. B. Downie, P. , and S. E. , The Embryo MADS Domain Protein AGAMOUS-Like 15 Directly Regulates Expression of a Gene Encoding an Enzyme Involved in Gibberellin Metabolism, Plant Cell, vol.16, pp.1206-1219, 2004.

H. Wang, C. Liu, J. Cheng, J. Liu, L. Zhang et al., Arabidopsis Flower and Embryo Developmental Genes are Repressed in Seedlings by Different Combinations of Polycomb Group Proteins in Association with Distinct Sets of Cisregulatory Elements, PLoS Genet, vol.12, 2016.

X. Wang, Q. W. Niu, C. Teng, C. Li, J. Mu et al., Overexpression of PGA37/MYB118 and MYB115 promotes vegetative-to-embryonic transition in Arabidopsis, Cell Res, vol.19, pp.224-235, 2009.

Y. Wang, D. Deng, R. Zhang, S. Wang, Y. Bian et al., Systematic analysis of plant-specific B3 domain-containing proteins based on the genome resources of 11 sequenced species, Mol. Biol. Rep, vol.39, pp.6267-6282, 2012.

Y. Wang, T. Zhang, X. Song, J. Zhang, Z. Dang et al., Identification and functional analysis of two alternatively spliced transcripts of ABSCISIC ACID INSENSITIVE3 (ABI3) in linseed flax (Linum usitatissimum L.), PLoS One, vol.13, 2018.

M. R. Willmann, A. J. Mehalick, R. L. Packer, J. , and P. D. , MicroRNAs regulate the timing of embryo maturation in Arabidopsis, Plant Physiol, vol.155, pp.1871-1884, 2011.

A. M. Wójcik, M. D. Nodine, and M. D. Gaj, miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis, Frontiers in Plant Science, vol.8, 2017.

B. Wojcikowska, K. Jaskola, P. Gasiorek, M. Meus, K. Nowak et al., LEAFY COTYLEDON2 (LEC2) promotes embryogenic induction in somatic tissues of Arabidopsis, via YUCCA-mediated auxin biosynthesis, Planta, vol.238, pp.425-440, 2013.

B. Wójcikowska and M. Gaj, LEAFY COTYLEDON2-mediated control of the endogenous hormone content: implications for the induction of somatic embryogenesis in Arabidopsis, Plant Cell, Tissue and Organ Culture (PCTOC), vol.121, pp.255-258, 2015.

J. Xiao and D. Wagner, Polycomb repression in the regulation of growth and development in Arabidopsis, Curr Opin Plant Biol, vol.23, pp.15-24, 2015.

J. Xiao, R. Jin, X. Yu, M. Shen, J. D. Wagner et al., Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis, Nat Genet, vol.49, pp.1546-1552, 2017.

F. Xu, T. Kuo, Y. Rosli, M. S. Liu, L. Wu et al., Trithorax group proteins act together with a Polycomb group protein to maintain chromatin integrity for epigenetic silencing during seed germination in Arabidopsis, Mol Plant, 2018.

Y. Xu, C. Guo, B. Zhou, C. Li, H. Wang et al., Regulation of Vegetative Phase Change by SWI2/SNF2, 2016.

, Chromatin Remodeling ATPase BRAHMA. Plant Physiol, vol.172, pp.2416-2428

A. Yamamoto, Y. Kagaya, R. Toyoshima, M. Kagaya, S. Takeda et al., , 2009.

, Arabidopsis NF-YB subunits LEC1 and LEC1-LIKE activate transcription by interacting with seedspecific ABRE-binding factors, Plant J

A. Yamamoto, Y. Kagaya, H. Usui, T. Hobo, S. Takeda et al., Diverse roles and mechanisms of gene regulation by the Arabidopsis seed maturation master regulator FUS3 revealed by microarray analysis, Plant Cell Physiol, vol.51, pp.2031-2046, 2010.

A. Yamamoto, M. Yoshii, S. Murase, M. Fujita, N. Kurata et al., Cell-by-cell developmental transition from embryo to post-germination phase revealed by heterochronic gene expression and ER-body formation in Arabidopsis leafy cotyledon mutants, Plant Cell Physiol, vol.55, pp.2112-2125, 2014.

C. Yang, F. Bratzel, N. Hohmann, M. Koch, F. Turck et al., VAL-and AtBMI1-mediated H2Aub initiate the switch from embryonic to postgerminative growth in Arabidopsis, Curr Biol, vol.23, pp.1324-1329, 2013.

R. Yang, Z. Zheng, Q. Chen, L. Yang, H. Huang et al., The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci, Genome Biol, vol.18, p.103, 2017.

W. Yang, W. Zhang, W. , and X. , Post-translational control of ABA signalling: the roles of protein phosphorylation and ubiquitination, Plant Biotechnol J, vol.15, pp.4-14, 2017.

M. Yoshii, A. Yamamoto, Y. Kagaya, S. Takeda, and T. Hattori, The Arabidopsis transcription factor NAI1 is required for enhancing the active histone mark but not for removing the repressive mark on PYK10, a seedling-specific gene upon embryonic-to-postgerminative developmental phase transition, Plant Signal Behav, vol.10, 2015.

W. Yuan, X. Luo, Z. Li, W. Yang, Y. Wang et al., A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis, Nat Genet, vol.48, pp.1527-1534, 2016.

K. S. Zaret, Pioneering the chromatin landscape, Nat Genet, vol.50, pp.167-169, 2018.

D. Zhang, Y. Jing, Z. Jiang, L. , and R. , The Chromatin-Remodeling Factor PICKLE Integrates Brassinosteroid and Gibberellin Signaling during Skotomorphogenic Growth in Arabidopsis, Plant Cell, vol.26, pp.2472-2485, 2014.

H. Zhang, B. Bishop, W. Ringenberg, W. M. Muir, and J. Ogas, The CHD3 remodeler PICKLE associates with genes enriched for trimethylation of histone H3 lysine 27, Plant Physiol, vol.159, pp.418-432, 2012.

H. Zhang, S. D. Rider, . Jr, J. T. Henderson, M. Fountain et al., The CHD3 remodeler PICKLE promotes trimethylation of histone H3 lysine 27, J Biol Chem, vol.283, pp.22637-22648, 2008.

X. Zhang, V. Garreton, and N. Chua, The AIP2 E3 ligase acts as a novel negative regulator of ABA signaling by promoting ABI3 degradation, 2005.

, Genes Dev, vol.19, pp.1532-1543

X. Zhang, S. Germann, B. J. Blus, S. Khorasanizadeh, V. Gaudin et al., , 2007.

, The Arabidopsis LHP1 protein colocalizes with histone H3 Lys27 trimethylation, Nat Struct Mol Biol, vol.14, pp.869-871

Y. Zhang, G. Cao, L. J. Qu, and H. Gu, Involvement of an R2R3-MYB transcription factor gene AtMYB118 in embryogenesis in Arabidopsis, Plant Cell Rep, vol.28, pp.337-346, 2009.

Y. Zhang, A. Clemens, S. N. Maximova, and M. J. Guiltinan, The Theobroma cacao B3 domain transcription factor TcLEC2 plays a duel role in control of embryo development and maturation, BMC Plant Biol, vol.14, p.106, 2014.

H. Zhao, D. Wu, F. Kong, K. Lin, H. Zhang et al., The Arabidopsis thaliana Nuclear Factor Y Transcription Factors, Frontiers in Plant Science, vol.7, 2016.

M. Zhao, S. Yang, X. Liu, and K. Wu, Arabidopsis histone demethylases LDL1 and LDL2 control primary seed dormancy by regulating DELAY OF GERMINATION 1 and ABA signalingrelated genes, Front Plant Sci, vol.6, p.159, 2015.

J. Zheng, F. Chen, Z. Wang, H. Cao, X. Li et al., A novel role for histone methyltransferase KYP/SUVH4 in the control of Arabidopsis primary seed dormancy, New Phytol, vol.193, pp.605-616, 2012.

Y. Zheng, N. Ren, H. Wang, A. J. Stromberg, P. et al., Global identification of targets of the Arabidopsis MADS domain protein AGAMOUS-Like15, Plant Cell, vol.21, pp.2563-2577, 2009.

E. Zhiguo, T. Li, H. Zhang, Z. Liu, H. Deng et al., A group of Nuclear Factor Y Transcription Factors are Sub-Functionalized During Endosperm Development in Monocots, J Exp Bot, vol.69, pp.2495-2510, 2018.

Y. Zhou, F. J. Romero-campero, A. Gomez-zambrano, F. Turck, C. et al., H2A monoubiquitination in Arabidopsis thaliana is generally independent of LHP1 and PRC2 activity, Genome Biol, vol.18, p.69, 2017.

Y. Zhou, B. Tan, M. Luo, Y. Li, C. Liu et al., , 2013.

, HISTONE DEACETYLASE19 interacts with HSL1 and participates in the repression of seed maturation genes in Arabidopsis seedlings, Plant Cell, vol.25, pp.134-148

C. Zhu, P. , and S. E. , Control of expression and autoregulation of AGL15, a member of the MADS-box family, Plant J, vol.41, pp.583-594, 2005.

Y. Zhu, Z. Xie, J. Wang, Y. Liu, W. et al., Cloning and characterization of two genes coding for the histone acetyltransferases, Elp3 and Mof, in brown planthopper (BPH), Nilaparvata lugens (Stal), Gene, vol.513, pp.63-70, 2013.