<?xml version="1.0" encoding="utf-8"?>
<TEI xmlns="http://www.tei-c.org/ns/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:hal="http://hal.archives-ouvertes.fr/" xmlns:gml="http://www.opengis.net/gml/3.3/" xmlns:gmlce="http://www.opengis.net/gml/3.3/ce" version="1.1" xsi:schemaLocation="http://www.tei-c.org/ns/1.0 http://api.archives-ouvertes.fr/documents/aofr-sword.xsd">
  <teiHeader>
    <fileDesc>
      <titleStmt>
        <title>HAL TEI export of hal-02066691</title>
      </titleStmt>
      <publicationStmt>
        <distributor>CCSD</distributor>
        <availability status="restricted">
          <licence target="https://creativecommons.org/publicdomain/zero/1.0/">CC0 1.0 - Universal</licence>
        </availability>
        <date when="2026-05-23T22:57:23+02:00"/>
      </publicationStmt>
      <sourceDesc>
        <p part="N">HAL API Platform</p>
      </sourceDesc>
    </fileDesc>
  </teiHeader>
  <text>
    <body>
      <listBibl>
        <biblFull>
          <titleStmt>
            <title xml:lang="en">Gray-level discretization impacts reproducible MRI radiomics texture features</title>
            <author role="aut">
              <persName>
                <forename type="first">Loïc</forename>
                <surname>Duron</surname>
              </persName>
              <idno type="halauthorid">1080438-0</idno>
              <affiliation ref="#struct-452220"/>
              <affiliation ref="#struct-81503"/>
              <affiliation ref="#struct-303171"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Daniel</forename>
                <surname>Balvay</surname>
              </persName>
              <idno type="halauthorid">201241-0</idno>
              <affiliation ref="#struct-81503"/>
              <affiliation ref="#struct-303171"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Saskia</forename>
                <surname>Vande Perre</surname>
              </persName>
              <idno type="halauthorid">1496747-0</idno>
              <affiliation ref="#struct-81503"/>
              <affiliation ref="#struct-303171"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Afef</forename>
                <surname>Bouchouicha</surname>
              </persName>
              <idno type="halauthorid">1544956-0</idno>
              <affiliation ref="#struct-81503"/>
              <affiliation ref="#struct-303171"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Julien</forename>
                <surname>Savatovsky</surname>
              </persName>
              <email type="md5">b33dd7fea155a9d215bd2076e9be98de</email>
              <email type="domain">gmail.com</email>
              <idno type="idhal" notation="numeric">990242</idno>
              <idno type="halauthorid" notation="string">694557-990242</idno>
              <affiliation ref="#struct-452220"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Jean-Claude</forename>
                <surname>Sadik</surname>
              </persName>
              <idno type="halauthorid">1544957-0</idno>
              <affiliation ref="#struct-452220"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Isabelle</forename>
                <surname>Thomassin-Naggara</surname>
              </persName>
              <idno type="halauthorid">872938-0</idno>
              <affiliation ref="#struct-328304"/>
              <affiliation ref="#struct-81503"/>
              <affiliation ref="#struct-303171"/>
              <affiliation ref="#struct-413221"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Laure</forename>
                <surname>Fournier</surname>
              </persName>
              <email type="md5">4aebbdd8614b3398aa8b0acf62871b69</email>
              <email type="domain">parisdescartes.fr</email>
              <idno type="idhal" notation="string">laure-fournier</idno>
              <idno type="idhal" notation="numeric">740491</idno>
              <idno type="halauthorid" notation="string">4796-740491</idno>
              <idno type="ORCID">https://orcid.org/0000-0002-1878-0290</idno>
              <idno type="IDREF">https://www.idref.fr/107973731</idno>
              <affiliation ref="#struct-81503"/>
              <affiliation ref="#struct-303171"/>
              <affiliation ref="#struct-459308"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Augustin</forename>
                <surname>Lecler</surname>
              </persName>
              <idno type="halauthorid">1326253-0</idno>
              <affiliation ref="#struct-81503"/>
              <affiliation ref="#struct-303171"/>
              <affiliation ref="#struct-452220"/>
            </author>
            <editor role="depositor">
              <persName>
                <forename>Sorbonne Université</forename>
                <surname>Gestionnaire HAL 4</surname>
              </persName>
              <email type="md5">b0df5888550d3ab0396b665cb2d17739</email>
              <email type="domain">scd.upmc.fr</email>
            </editor>
          </titleStmt>
          <editionStmt>
            <edition n="v1" type="current">
              <date type="whenSubmitted">2019-03-13 15:55:42</date>
              <date type="whenModified">2023-12-14 13:50:37</date>
              <date type="whenReleased">2019-03-13 16:33:30</date>
              <date type="whenProduced">2019</date>
              <date type="whenEndEmbargoed">2019-03-13</date>
              <ref type="file" target="https://hal.sorbonne-universite.fr/hal-02066691v1/document">
                <date notBefore="2019-03-13"/>
              </ref>
              <ref type="file" subtype="publisherPaid" n="1" target="https://hal.sorbonne-universite.fr/hal-02066691v1/file/journal.pone.0213459.pdf" id="file-2066691-2068778">
                <date notBefore="2019-03-13"/>
              </ref>
              <ref type="externalLink" target="https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0213459&amp;type=printable"/>
            </edition>
            <respStmt>
              <resp>contributor</resp>
              <name key="1066187">
                <persName>
                  <forename>Sorbonne Université</forename>
                  <surname>Gestionnaire HAL 4</surname>
                </persName>
                <email type="md5">b0df5888550d3ab0396b665cb2d17739</email>
                <email type="domain">scd.upmc.fr</email>
              </name>
            </respStmt>
          </editionStmt>
          <publicationStmt>
            <distributor>CCSD</distributor>
            <idno type="halId">hal-02066691</idno>
            <idno type="halUri">https://hal.sorbonne-universite.fr/hal-02066691</idno>
            <idno type="halBibtex">duron:hal-02066691</idno>
            <idno type="halRefHtml">&lt;i&gt;PLoS ONE&lt;/i&gt;, 2019, 14 (3), pp.e0213459. &lt;a target="_blank" href="https://dx.doi.org/10.1371/journal.pone.0213459"&gt;&amp;#x27E8;10.1371/journal.pone.0213459&amp;#x27E9;&lt;/a&gt;</idno>
            <idno type="halRef">PLoS ONE, 2019, 14 (3), pp.e0213459. &amp;#x27E8;10.1371/journal.pone.0213459&amp;#x27E9;</idno>
            <availability status="restricted">
              <licence target="https://about.hal.science/hal-authorisation-v1/">HAL Authorization<ref corresp="#file-2066691-2068778"/></licence>
            </availability>
          </publicationStmt>
          <seriesStmt>
            <idno type="stamp" n="UNIV-PARIS5" corresp="UNIV-PARIS">Université Paris Descartes (Paris 5)</idno>
            <idno type="stamp" n="APHP" corresp="INSERM">AP-HP</idno>
            <idno type="stamp" n="USPC">Université Sorbonne Paris Cité</idno>
            <idno type="stamp" n="CHU-UNIV-PARIS5">Les centres hospitaliers de Paris Descartes</idno>
            <idno type="stamp" n="SORBONNE-UNIVERSITE">Sorbonne Université</idno>
            <idno type="stamp" n="SORBONNE-UNIV" corresp="SORBONNE-UNIVERSITE">Sorbonne Université 01/01/2018</idno>
            <idno type="stamp" n="SU-MEDECINE" corresp="SORBONNE-UNIVERSITE">Faculté de Santé de Sorbonne Université</idno>
            <idno type="stamp" n="SU-MED" corresp="SORBONNE-UNIVERSITE">Médecine - Sorbonne Université</idno>
            <idno type="stamp" n="UNIV-PARIS">Université Paris Cité</idno>
            <idno type="stamp" n="UP-SANTE">Université Paris Cité - Faculté de Santé</idno>
            <idno type="stamp" n="SU-TI">Sorbonne Université - Texte Intégral</idno>
            <idno type="stamp" n="ALLIANCE-SU"> Alliance Sorbonne Université</idno>
            <idno type="stamp" n="FRM">Fondation pour la Recherche Médicale</idno>
          </seriesStmt>
          <notesStmt>
            <note type="audience" n="2">International</note>
            <note type="popular" n="0">No</note>
            <note type="peer" n="1">Yes</note>
          </notesStmt>
          <sourceDesc>
            <biblStruct>
              <analytic>
                <title xml:lang="en">Gray-level discretization impacts reproducible MRI radiomics texture features</title>
                <author role="aut">
                  <persName>
                    <forename type="first">Loïc</forename>
                    <surname>Duron</surname>
                  </persName>
                  <idno type="halauthorid">1080438-0</idno>
                  <affiliation ref="#struct-452220"/>
                  <affiliation ref="#struct-81503"/>
                  <affiliation ref="#struct-303171"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Daniel</forename>
                    <surname>Balvay</surname>
                  </persName>
                  <idno type="halauthorid">201241-0</idno>
                  <affiliation ref="#struct-81503"/>
                  <affiliation ref="#struct-303171"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Saskia</forename>
                    <surname>Vande Perre</surname>
                  </persName>
                  <idno type="halauthorid">1496747-0</idno>
                  <affiliation ref="#struct-81503"/>
                  <affiliation ref="#struct-303171"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Afef</forename>
                    <surname>Bouchouicha</surname>
                  </persName>
                  <idno type="halauthorid">1544956-0</idno>
                  <affiliation ref="#struct-81503"/>
                  <affiliation ref="#struct-303171"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Julien</forename>
                    <surname>Savatovsky</surname>
                  </persName>
                  <email type="md5">b33dd7fea155a9d215bd2076e9be98de</email>
                  <email type="domain">gmail.com</email>
                  <idno type="idhal" notation="numeric">990242</idno>
                  <idno type="halauthorid" notation="string">694557-990242</idno>
                  <affiliation ref="#struct-452220"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Jean-Claude</forename>
                    <surname>Sadik</surname>
                  </persName>
                  <idno type="halauthorid">1544957-0</idno>
                  <affiliation ref="#struct-452220"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Isabelle</forename>
                    <surname>Thomassin-Naggara</surname>
                  </persName>
                  <idno type="halauthorid">872938-0</idno>
                  <affiliation ref="#struct-328304"/>
                  <affiliation ref="#struct-81503"/>
                  <affiliation ref="#struct-303171"/>
                  <affiliation ref="#struct-413221"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Laure</forename>
                    <surname>Fournier</surname>
                  </persName>
                  <email type="md5">4aebbdd8614b3398aa8b0acf62871b69</email>
                  <email type="domain">parisdescartes.fr</email>
                  <idno type="idhal" notation="string">laure-fournier</idno>
                  <idno type="idhal" notation="numeric">740491</idno>
                  <idno type="halauthorid" notation="string">4796-740491</idno>
                  <idno type="ORCID">https://orcid.org/0000-0002-1878-0290</idno>
                  <idno type="IDREF">https://www.idref.fr/107973731</idno>
                  <affiliation ref="#struct-81503"/>
                  <affiliation ref="#struct-303171"/>
                  <affiliation ref="#struct-459308"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Augustin</forename>
                    <surname>Lecler</surname>
                  </persName>
                  <idno type="halauthorid">1326253-0</idno>
                  <affiliation ref="#struct-81503"/>
                  <affiliation ref="#struct-303171"/>
                  <affiliation ref="#struct-452220"/>
                </author>
              </analytic>
              <monogr>
                <idno type="halJournalId" status="VALID">28700</idno>
                <idno type="issn">1932-6203</idno>
                <idno type="eissn">1932-6203</idno>
                <title level="j">PLoS ONE</title>
                <imprint>
                  <publisher>Public Library of Science</publisher>
                  <biblScope unit="volume">14</biblScope>
                  <biblScope unit="issue">3</biblScope>
                  <biblScope unit="pp">e0213459</biblScope>
                  <date type="datePub">2019</date>
                  <date type="dateEpub">2019-03-07</date>
                </imprint>
              </monogr>
              <idno type="doi">10.1371/journal.pone.0213459</idno>
              <idno type="pubmed">30845221</idno>
            </biblStruct>
          </sourceDesc>
          <profileDesc>
            <langUsage>
              <language ident="en">English</language>
            </langUsage>
            <textClass>
              <classCode scheme="halDomain" n="sdv.ib.ima">Life Sciences [q-bio]/Bioengineering/Imaging</classCode>
              <classCode scheme="halTypology" n="ART">Journal articles</classCode>
              <classCode scheme="halOldTypology" n="ART">Journal articles</classCode>
              <classCode scheme="halTreeTypology" n="ART">Journal articles</classCode>
            </textClass>
            <abstract xml:lang="en">
              <p>OBJECTIVES: To assess the influence of gray-level discretization on inter- and intra-observer reproducibility of texture radiomics features on clinical MR images.MATERIALS AND METHODS: We studied two independent MRI datasets of 74 lacrymal gland tumors and 30 breast lesions from two different centers. Two pairs of readers performed three two-dimensional delineations for each dataset. Texture features were extracted using two radiomics softwares (Pyradiomics and an in-house software). Reproducible features were selected using a combination of intra-class correlation coefficient (ICC) and concordance and coherence coefficient (CCC) with 0.8 and 0.9 as thresholds, respectively. We tested six absolute and eight relative gray-level discretization methods and analyzed the distribution and highest number of reproducible features obtained for each discretization. We also analyzed the number of reproducible features extracted from computer simulated delineations representative of inter-observer variability.RESULTS: The gray-level discretization method had a direct impact on texture feature reproducibility, independent of observers, software or method of delineation (simulated vs. human). The absolute discretization consistently provided statistically significantly more reproducible features than the relative discretization. Varying the bin number of relative discretization led to statistically significantly more variable results than varying the bin size of absolute discretization.CONCLUSIONS: When considering inter-observer reproducible results of MRI texture radiomics features, an absolute discretization should be favored to allow the extraction of the highest number of potential candidates for new imaging biomarkers. Whichever the chosen method, it should be systematically documented to allow replicability of results.</p>
            </abstract>
          </profileDesc>
        </biblFull>
      </listBibl>
    </body>
    <back>
      <listOrg type="structures">
        <org type="institution" xml:id="struct-452220" status="VALID">
          <idno type="ROR">https://ror.org/02mdxv534</idno>
          <orgName>Fondation Ophtalmologique Adolphe de Rothschild [Paris]</orgName>
          <desc>
            <address>
              <addrLine>29 rue Manin - 75019 Paris</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.fo-rothschild.fr/</ref>
          </desc>
        </org>
        <org type="laboratory" xml:id="struct-81503" status="OLD">
          <idno type="IdRef">166439185</idno>
          <idno type="ISNI">0000 0004 0495 1460 </idno>
          <idno type="RNSR">201019165T</idno>
          <idno type="ROR">https://ror.org/03gvnh520</idno>
          <orgName>Paris-Centre de Recherche Cardiovasculaire</orgName>
          <orgName type="acronym">PARCC - UMR-S U970</orgName>
          <date type="start">2009-01-01</date>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <addrLine>56 rue Leblanc75015 PARISFRANCE</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://parcc.inserm.fr/</ref>
          </desc>
          <listRelation>
            <relation name="U970" active="#struct-300119" type="direct"/>
            <relation active="#struct-300068" type="indirect"/>
            <relation active="#struct-353414" type="indirect"/>
            <relation name="UMR_S 970" active="#struct-301664" type="direct"/>
            <relation name="U970" active="#struct-303623" type="direct"/>
          </listRelation>
        </org>
        <org type="regroupinstitution" xml:id="struct-303171" status="VALID">
          <idno type="IdRef">19077990X</idno>
          <idno type="ROR">https://ror.org/001z21q04</idno>
          <orgName>Université Sorbonne Paris Cité</orgName>
          <orgName type="acronym">USPC</orgName>
          <date type="start">2010-01-01</date>
          <desc>
            <address>
              <addrLine>Université Sorbonne Paris Cité | 100-104, avenue de France | 75013 Paris</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.sorbonne-paris-cite.fr/fr</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-328304" status="VALID">
          <orgName>CHU Tenon [AP-HP]</orgName>
          <desc>
            <address>
              <addrLine>4 Rue de la Chine, 75020 Paris</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.aphp.fr/contenu/hopital-tenon-1</ref>
          </desc>
          <listRelation>
            <relation active="#struct-300068" type="direct"/>
            <relation active="#struct-413221" type="direct"/>
          </listRelation>
        </org>
        <org type="regroupinstitution" xml:id="struct-413221" status="VALID">
          <idno type="IdRef">221333754</idno>
          <idno type="ROR">https://ror.org/02en5vm52</idno>
          <orgName>Sorbonne Université</orgName>
          <orgName type="acronym">SU</orgName>
          <date type="start">2018-01-01</date>
          <desc>
            <address>
              <addrLine>21 rue de l’École de médecine - 75006 Paris</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.sorbonne-universite.fr/</ref>
          </desc>
        </org>
        <org type="department" xml:id="struct-459308" status="VALID">
          <orgName>Service de Radiologie [CHU HEGP]</orgName>
          <desc>
            <address>
              <country key="FR"/>
            </address>
          </desc>
          <listRelation>
            <relation active="#struct-300119" type="direct"/>
            <relation active="#struct-300068" type="indirect"/>
            <relation active="#struct-353414" type="indirect"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-300119" status="VALID">
          <idno type="IdRef">052497380</idno>
          <idno type="ROR">https://ror.org/016vx5156</idno>
          <orgName>Hôpital Européen Georges Pompidou [APHP]</orgName>
          <orgName type="acronym">HEGP</orgName>
          <desc>
            <address>
              <addrLine>20, rue Leblanc, 75015 Paris</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://hopital-georgespompidou.aphp.fr/</ref>
          </desc>
          <listRelation>
            <relation active="#struct-300068" type="direct"/>
            <relation active="#struct-353414" type="direct"/>
          </listRelation>
        </org>
        <org type="regroupinstitution" xml:id="struct-300068" status="VALID">
          <idno type="ROR">https://ror.org/00pg5jh14</idno>
          <orgName>Assistance publique - Hôpitaux de Paris (AP-HP)</orgName>
          <orgName type="acronym">AP-HP</orgName>
          <desc>
            <address>
              <country key="FR"/>
            </address>
          </desc>
        </org>
        <org type="regroupinstitution" xml:id="struct-353414" status="VALID">
          <orgName>Hôpitaux Universitaires Paris Ouest - Hôpitaux Universitaires Île de France Ouest</orgName>
          <orgName type="acronym">HUPO</orgName>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">http://hopitaux-parisouest.aphp.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-301664" status="OLD">
          <idno type="IdRef">026404788</idno>
          <idno type="ISNI">0000 0001 2188 0914 </idno>
          <idno type="ROR">https://ror.org/0220k9r37</idno>
          <orgName>Université Paris Descartes - Paris 5</orgName>
          <orgName type="acronym">UPD5</orgName>
          <date type="start">1971-01-01</date>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <addrLine>12, rue de l'École de Médecine - 75270 Paris cedex 06</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.parisdescartes.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-303623" status="VALID">
          <idno type="IdRef">026388278</idno>
          <idno type="ROR">https://ror.org/02vjkv261</idno>
          <orgName>Institut National de la Santé et de la Recherche Médicale</orgName>
          <orgName type="acronym">INSERM</orgName>
          <desc>
            <address>
              <addrLine>101, rue de Tolbiac, 75013 Paris</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.inserm.fr</ref>
          </desc>
        </org>
      </listOrg>
    </back>
  </text>
</TEI>