Giant molecules: here and there and everywhere, 2011. ,
Super-resolution imaging reveals distinct chromatin folding for different epigenetic states, Nature, vol.529, issue.7586, pp.418-440, 2016. ,
Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions, Nature Communications, vol.8, issue.1, p.1753, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01652403
Three-dimensional folding and functional organization principles of the drosophila genome, Cell, vol.148, issue.3, pp.458-72, 2012. ,
Systematic protein location mapping reveals five principal chromatin types in drosophila cells, Cell, vol.143, issue.2, pp.212-236, 2010. ,
Perspectives: using polymer modeling to understand the formation and function of nuclear compartments. Chromosome Res, vol.25, pp.35-50, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01976574
Modeling epigenome folding: formation and dynamics of topologically associated chromatin domains, Nucleic Acids Res, vol.42, issue.15, pp.9553-61, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01064092
Interactions between isolated nucleosome core particles: a tail-bridging effect?, Eur Phys J E, vol.03, issue.7, pp.221-252, 2002. ,
Salt-induced conformation and interaction changes of nucleosome core particles, Biophys J, vol.02, issue.82, pp.345-56, 2002. ,
First observation of the coil-globule transition in a single polymer chain, Nature, vol.281, issue.5728, pp.208-217, 1979. ,
Statistical physics of macromolecules, 1994. ,
Dynamic properties of independent chromatin domains measured by correlation spectroscopy in living cells, Epigenet Chromatin, vol.9, issue.1, p.57, 2016. ,
Simulations of three-dimensional ? polymers, J Chem Phys, vol.102, issue.17, pp.6881-99, 1995. ,
Finite-size conformational transitions: a unifying concept underlying chromosome dynamics, Commun Theor Phys, vol.62, issue.4, p.607, 2014. ,
The gyration radius distribution of two-dimensional polymer chains in a good solvent, J Chem Phys, vol.92, issue.2, pp.1362-1366, 1990. ,
The number of contacts in a self-avoiding walk of variable radius of gyration in two and three dimensions, J Chem Phys, vol.100, issue.7, pp.5372-5379, 1994. ,
Finite-size polymer simulations and theory ,
Distribution of the order parameter of the coil-globule transition, Phys Rev E, vol.56, issue.5, pp.5630-5677, 1997. ,
Macromolecular dimensions obtained by an efficient Monte Carlo method without sample attrition, J Chem Phys, vol.63, issue.11, pp.4592-4597, 1975. ,
Chromatin epigenomic domain folding: size matters, AIMS Biophys, vol.2, p.517, 2015. ,
, The MCMC hammer. PASP, vol.125, pp.306-318, 2013.
Disruption of topoisomerase II perturbs pairing in drosophila cell culture, Genetics, vol.177, issue.1, pp.31-46, 2007. ,
Investigating the interplay between sister chromatid cohesion and homolog pairing in drosophila nuclei, PLoS Genet, vol.12, issue.8, p.1006169, 2016. ,
TADs are 3D structural units of higher-order chromosome organization in Drosophila, Sci Adv, vol.4, issue.2, p.8082, 2018. ,
CHRAC/ACF contribute to the repressive ground state of chromatin, Life Sci. Alliance, vol.1, issue.1, p.201800024, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-02109020
Chromatin: a tunable spring at work inside chromosomes, Phys Rev E, vol.64, p.51921, 2001. ,
ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells, Science, vol.357, issue.6349, p.25, 2017. ,
Sub-nucleosomal genome structure reveals distinct nucleosome folding motifs, Cell, vol.176, issue.3, pp.520-554, 2019. ,
In vivo, chromatin is a fluctuating polymer chain at equilibrium constrained by internal friction, 2017. ,
Formation of correlated chromatin domains at nanoscale dynamic resolution during transcription, Nucleic Acids Res, vol.46, issue.13, p.77, 2018. ,
Dynamic organization of chromatin domains revealed by super-resolution live-cell imaging, Mol Cell, vol.67, issue.2, pp.282-93, 2017. ,
Long-range compaction and flexibility of interphase chromatin in budding yeast analyzed by high-resolution imaging techniques, Proc Natl Acad Sci, vol.101, issue.47, pp.16495-500, 2004. ,
Mapping in vivo chromatin interactions in yeast suggests an extended chromatin fiber with regional variation in compaction, J Biol Chem, vol.283, issue.50, pp.34532-34572, 2008. ,
Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes, Proc Natl Acad Sci, vol.112, issue.47, pp.6456-65, 2015. ,
Chromatin organization by an interplay of loop extrusion and compartmental segregation, Proc Natl Acad Sci, vol.115, issue.29, pp.6697-706, 2018. ,
convenient online submission ? thorough peer review by experienced researchers in your field ? rapid publication on acceptance ? support for research data, including large and complex data types ? gold Open Access which fosters wider collaboration and increased citations maximum visibility for your research ,
, Ready to submit your research ? Choose BMC and benefit from: 36. van Steensel B. Chromatin: constructing the big picture, EMBO J, vol.30, issue.10, pp.1885-95, 2011.
How short-ranged electrostatics controls the chromatin structure on much larger scales, Europhysics Letters), vol.58, issue.1, p.140, 2002. ,
IC-Finder: inferring robustly the hierarchical organization of chromatin folding, Nucleic Acids Res, vol.45, issue.10, p.81, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01976542
How epigenome drives chromatin folding and dynamics, insights from efficient coarse-grained models of chromosomes, PLOS Comput Biol, vol.14, issue.5, pp.1-26, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01976607
Heterochromatin drives organization of conventional and inverted nuclei. bioRxiv, 2018. ,
The potential of 3D-FISH and super-resolution structured illumination microscopy for studies of 3D nuclear architecture, BioEssays, vol.34, issue.5, pp.412-438, 2012. ,
Transcription elongation through a chromatin template, DNA Topology, vol.89, issue.4, pp.516-543, 2007. ,
DOI : 10.1016/j.biochi.2006.09.019
Chromatin unfolding by epigenetic modifications explained by dramatic impairment of internucleosome interactions: a multiscale computational study, J Am Chem Soc, vol.137, issue.32, p.26192632, 2015. ,
The effects of histone H4 tail acetylations on cation-induced chromatin folding and self-association, Nucleic Acids Res, vol.39, issue.5, pp.1680-91, 2011. ,
Chromatin fibers are formed by heterogeneous groups of nucleosomes in vivo, Cell, vol.160, issue.6, pp.1145-58, 2015. ,
Scaling concepts in polymer physics, 1979. ,
The fractal globule as a model of chromatin architecture in the cell, Chromosome Res, vol.19, issue.1, pp.37-51, 2011. ,
Polycomb-mediated chromatin loops revealed by a subkilobase-resolution chromatin interaction map, Proc Natl Acad Sci, vol.114, issue.33, pp.8764-8773, 2017. ,
DOI : 10.1073/pnas.1701291114
URL : http://europepmc.org/articles/pmc5565414?pdf=render
Cryo-EM of nucleosome core particle interactions in trans, Sci Rep, vol.8, issue.1, p.7046, 2018. ,
Polymer physics of intracellular phase transitions, Nat Phys, 2015. ,
Organization and regulation of chromatin by liquid-liquid phase separation. bioRxiv, 2019. ,
DOI : 10.1101/523662
URL : https://www.biorxiv.org/content/biorxiv/early/2019/01/18/523662.full.pdf
Super-resolution imaging of higher-order chromatin structures at different epigenomic states in single mammalian cells, Cell Rep, vol.24, issue.4, pp.873-82, 2018. ,