L. S. Chawla, P. W. Eggers, R. A. Star, and P. L. Kimmel, Acute kidney injury and chronic kidney disease as interconnected syndromes, N Engl J Med, vol.371, pp.58-66, 2014.

R. Wald, R. R. Quinn, J. Luo, P. Li, D. C. Scales et al., Chronic dialysis and death among survivors of acute kidney injury requiring dialysis, JAMA, vol.302, pp.1179-1185, 2009.

A. Ishani, J. L. Xue, J. Himmelfarb, P. W. Eggers, P. L. Kimmel et al., Acute kidney injury increases risk of ESRD among elderly, J Am Soc Nephrol, vol.20, pp.223-228, 2009.

I. D. Bucaloiu, H. L. Kirchner, E. R. Norfolk, J. E. Hartle, and R. M. Perkins, Increased risk of death and de novo chronic kidney disease following reversible acute kidney injury, Kidney Int, vol.81, pp.477-485, 2012.

D. Legouis, P. Galichon, A. Bataille, S. Chevret, S. Provenchère et al., Rapid Occurrence of Chronic Kidney Disease in Patients Experiencing Reversible Acute Kidney Injury after Cardiac Surgery, Anesthesiology, vol.126, pp.39-46, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01398136

J. V. Bonventre and L. Yang, Cellular pathophysiology of ischemic acute kidney injury, J Clin Invest, vol.121, pp.4210-4221, 2011.

L. Yang, T. Y. Besschetnova, C. R. Brooks, J. V. Shah, and J. V. Bonventre, Epithelial cell cycle arrest in G2/M mediates kidney fibrosis after injury, Nat Med, vol.16, pp.1-143, 2010.

M. T. Grande, B. Sánchez-laorden, C. López-blau, D. Frutos, C. A. Boutet et al., Snail1-induced partial epithelial-to-mesenchymal transition drives renal fibrosis in mice and can be targeted to reverse established disease, Nat Med, vol.21, pp.989-997, 2015.

S. Lovisa, V. S. Lebleu, B. Tampe, H. Sugimoto, K. Vadnagara et al., Epithelial-to-mesenchymal transition induces cell cycle arrest and parenchymal damage in renal fibrosis, Nat Med, vol.21, pp.998-1009, 2015.

H. M. Kang, S. H. Ahn, P. Choi, Y. A. Ko, S. H. Han et al., Defective fatty acid oxidation in renal tubular epithelial cells has a key role in kidney fibrosis development, Nat Med, vol.21, pp.37-46, 2015.

Q. Wei and Z. Dong, Mouse model of ischemic acute kidney injury: technical notes and tricks, Am J Physiol Renal Physiol, vol.303, pp.1487-1494, 2012.

N. A. Joshi and J. N. Fass, Sickle: A sliding-window, adaptive, quality-based trimming tool for FastQ files, 2011.

C. Trapnell, L. Pachter, and S. L. Salzberg, TopHat: discovering splice junctions with RNA-Seq, Bioinformatics, vol.25, pp.1105-1111, 2009.

H. Li, B. Handsaker, A. Wysoker, T. Fennell, J. Ruan et al., Durbin R; 1000 Genome Project Data Processing Subgroup:The Sequence Alignment/Map format and SAMtools, Bioinformatics, vol.25, pp.2078-2079, 2009.

C. Trapnell, B. A. Williams, G. Pertea, A. Mortazavi, G. Kwan et al., Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation, Nat Biotechnol, vol.28, pp.511-515, 2010.

L. Goff, C. Trapnell, and D. Kelley, cummeRbund: Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data

J. H. Kim, A. Karnovsky, V. Mahavisno, T. Weymouth, M. Pande et al., LRpath analysis reveals common pathways dysregulated via DNA methylation across cancer types, BMC Genomics, vol.13, p.526, 2012.

C. Lee, S. Patil, and M. A. Sartor, RNA-Enrich: a cut-off free functional enrichment testing method for RNA-seq with improved detection power, Bioinformatics, vol.32, pp.1100-1102, 2016.

F. Supek, M. Bo?njak, N. ?kunca, and T. ?muc, REVIGO summarizes and visualizes long lists of gene ontology terms, PLoS ONE, vol.6, p.21800, 2011.

D. Legouis, A. Bataille, A. Hertig, S. Vandermeersch, N. Simon et al., Ex vivo analysis of renal proximal tubular cells, BMC Cell Biol, vol.16, p.12, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01144197

D. Portilla, G. Dai, J. M. Peters, F. J. Gonzalez, M. D. Crew et al., Etomoxir-induced PPARalpha-modulated enzymes protect during acute renal failure, Am J Physiol Renal Physiol, vol.278, pp.667-675, 2000.

F. Luo, J. Shi, Q. Shi, X. Xu, Y. Xia et al., Mitogen-Activated Protein Kinases and Hypoxic/Ischemic Nephropathy, Cell Physiol Biochem, vol.39, pp.1051-1067, 2016.

X. Guan, Y. Qian, Y. Shen, L. Zhang, Y. Du et al., Autophagy protects renal tubular cells against ischemia / reperfusion injury in a time-dependent manner, Cell Physiol Biochem, vol.36, pp.285-298, 2015.

Y. Li, D. Zhong, L. Lei, Y. Jia, H. Zhou et al., Propofol Prevents Renal Ischemia-Reperfusion Injury via Inhibiting the Oxidative Stress Pathways, Cell Physiol Biochem, vol.37, pp.14-26, 2015.

C. Preising, R. Schneider, M. Bucher, M. Gekle, and C. Sauvant, Regulation of Expression of Renal Organic Anion Transporters OAT1 and OAT3 in a Model of Ischemia/Reperfusion Injury, Cell Physiol Biochem, vol.37, pp.1-13, 2015.

A. Brandoni and A. M. Torres, Altered Renal Expression of Relevant Clinical Drug Transporters in Different Models of Acute Uremia in Rats. Role of Urea Levels, Cell Physiol Biochem, vol.36, pp.907-916, 2015.

B. Sánchez-calvo, A. Cassina, N. Rios, G. Peluffo, J. Boggia et al., Nitro-Arachidonic Acid Prevents Angiotensin II-Induced Mitochondrial Dysfunction in a Cell Line of Kidney Proximal Tubular Cells, PLoS ONE, vol.11, p.150459, 2016.

B. Feng, R. Meng, B. Huang, Y. Bi, S. Shen et al., Silymarin protects against renal injury through normalization of lipid metabolism and mitochondrial biogenesis in high fat-fed mice, Free Radic Biol Med, vol.110, pp.240-249, 2017.