The ecological role of water-column microbes in the sea, Mar Ecol Prog Ser, vol.10, pp.257-263, 1983. ,
Review and re-analysis of domain-specific 16S primers, J Microbiol Methods, vol.55, pp.541-555, 2003. ,
Partialling out the spatial component of ecological variation, Ecology, vol.73, pp.1045-1055, 1992. ,
Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli, J Mol Biol, vol.148, pp.107-127, 1981. ,
Marine bacterial microdiversity as revealed by internal transcribed spacer analysis, Aquat Microb Ecol, vol.41, pp.15-23, 2005. ,
Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series, Environ Microbiol, vol.7, pp.1466-1479, 2005. ,
Estimating the population size for capturerecapture data with unequal catchability, Biometrics, vol.43, pp.783-791, 1987. ,
The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis, Nucleic Acids Res, vol.33, pp.294-296, 2005. ,
Single-cell analysis of bacterial growth, cell size, and community structure in the Delaware estuary, Aquat Microb Ecol, vol.34, pp.139-149, 2004. ,
Role of ribosome degradation in the death of starved Escherichia coli cells, J Bacteriol, vol.166, pp.439-445, 1986. ,
16S rDNA sequence diversity of a culture-accessible part of an anaerobic digestor bacterial community, Anaerobe, vol.4, pp.267-275, 1998. ,
Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells, Science, vol.243, pp.1360-1363, 1989. ,
Population dynamics of Cytophaga-Flavobacteria during marine phytoplankton blooms analyzed by real-time quantitative PCR, Aquat Microb Ecol, vol.40, pp.251-257, 2005. ,
Implications of rRNA operon copy number and ribosome content in the marine oligotrophic ultramicrobacterium Sphingomonas sp. strain RB2256, Appl Environ Microbiol, vol.64, pp.4433-4438, 1998. ,
High-diversity biofilm for the oxidation of sulfide-containing effluents, Appl Microbiol Biotechnol, vol.64, pp.726-734, 2004. ,
Characterization of a marine Gammaproteobacterium capable of aerobic anoxygenic photosynthesis, Proc Natl Acad Sci, vol.104, pp.2891-2896, 2007. ,
Annually reoccurring bacterial communities are predictable from ocean conditions, Proc Natl Acad Sci, vol.103, pp.13104-13109, 2006. ,
Study of bacterial communities in Antarctic coastal waters by a combination of 16S rRNA and 16S rDNA sequencing, Environ Microbiol, vol.8, pp.2150-2161, 2006. ,
Spatial and temporal scales of variation in bacterioplankton community structure in the NW Mediterranean Sea, Aquat Microb Ecol, vol.40, pp.229-240, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-00091839
Evolution, diversity and molecular ecology of marine prokaryotes. In: Kirchman DL (ed) Microbial ecology of the oceans, pp.47-48, 2000. ,
Genetic diversity in Sargasso Sea bacterioplankton, Nature, vol.345, pp.60-63, 1990. ,
Microbial community structure in the sea surface microlayer at two contrasting coastal sites in the northwestern Mediterranean Sea, Aquat Microb Ecol, vol.42, pp.91-104, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-01215023
Estimating the growth rate of slowly growing marine bacteria from RNA content, Appl Environ Microbiol, vol.59, pp.2594-2601, 1993. ,
Comparison of nucleic acid hybridization and fluorometry for measurement of the relationship between RNA/DNA ratio and growth rate in a marine bacterium, Appl Environ Microbiol, vol.59, pp.1303-1309, 1993. ,
Clusterer: extendable java application for sequence grouping and cluster analyses, Online J Bioinform, vol.7, pp.15-21, 2006. ,
Comparison of blue nucleic acid dyes for flow cytometric enumeration of bacteria in aquatic systems, Appl Environ Microbiol, vol.64, pp.1725-1730, 1998. ,
Single-cell RNA content of natural marine planktonic bacteria measured by hybridization with multiple 16S rRNA-targeted fluorescent probes, Limnol Oceanogr, vol.39, pp.869-879, 1994. ,
Nonradioactive method to study genetic profiles of natural bacterial communities by PCR-single-strand-conformation polymorphism, Appl Environ Microbiol, vol.62, pp.3112-3120, 1996. ,
Numerical ecology, 1983. ,
URL : https://hal.archives-ouvertes.fr/hal-00530195
Seasonal variation of bacterial production, respiration and growth efficiency in the open NW Mediterranean Sea, Aquat Microb Ecol, vol.29, pp.227-237, 2002. ,
Seasonal dynamics of bacterioplankton community structure at a coastal station in the western English channel, Aquat Microb Ecol, vol.42, pp.119-126, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-01829166
Horizontal and vertical complexity of attached and free-living bacteria of the eastern Mediterranean Sea, determined by 16S rDNA and 16S rRNA fingerprints, Limnol Oceanogr, vol.46, pp.95-107, 2001. ,
A comparison of DNA-and RNA-based clone libraries from the same marine bacterioplankton community, FEMS Microbiol Ecol, vol.51, pp.341-352, 2005. ,
Effect of growth rate and starvation-survival on cellular DNA, RNA, and protein of a psychrophilic marine bacterium, Appl Environ Microbiol, vol.55, pp.2710-2716, 1989. ,
Seasonal and spatial variability of bacterial and archaeal assemblages in coastal waters near Anvers Island, Antartica. Appl Environ Microbiol, vol.64, pp.2585-2595, 1998. ,
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reactionamplified genes encoding for 16S rRNA, Appl Environ Microbiol, vol.59, pp.695-700, 1993. ,
Dimethylsulfoniopropionate turnover is linked to the composition and dynamics of the bacterioplankton assemblage during a microcosm phytoplankton bloom, Appl Environ Microbiol, vol.71, pp.7650-7660, 2005. ,
Multivariate analyses in microbial ecology, FEMS Microbiol Ecol, vol.62, pp.142-160, 2007. ,
Seasonal dynamics of bacterial growth efficiencies in relation to phytoplankton in the southern North Sea, Aquat Microb Ecol, vol.39, pp.7-16, 2005. ,
Seasonal changes in the taxonomic composition of bacterioplankton in a coastal oligotrophic system, Aquat Microb Ecol, vol.31, pp.163-174, 2003. ,
CANOCO: a FORTRAN program for canonical community ordination by, Agricultural Mathematics Group, 1987. ,
Bacterial activity and genetic richness along an estuarine gradient (Rhone River plume, France), Aquat Microb Ecol, vol.28, pp.13-24, 2002. ,
URL : https://hal.archives-ouvertes.fr/hal-01663382
Major differences of bacterial diversity and activity inside and outside of a natural iron-fertilized phytoplankton bloom in the Southern Ocean, Environ Microbiol, vol.10, pp.738-756, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-01205626
Linking the composition of bacterioplankton to rapid turnover of dissolved dimethylsulphoniopropionate in an algal bloom in the North Sea, Environ Microbiol, vol.3, pp.304-311, 2001. ,
Examination of two years of community dynamics in an anaerobic bioreactor using fluorescence polymerase chain reaction (PCR) single-strand conformation polymorphism analysis, Environ Microbiol, vol.2, pp.69-78, 2000. ,
URL : https://hal.archives-ouvertes.fr/hal-02698307