Co-containing Beta zeolite catalysts prepared by a wet impregnation and two-step postsynthesis method were investigated. The activity of the catalysts was examined in Fischer-Tropsch synthesis (FTS), performed at 30 atm and 260 °C. The physicochemical properties of all systems were investigated by means of X-ray diffraction (XRD), in situ XRD, temperature programmed desorption of ammonia (NH3-TPD), X-ray Photoelectron Spectroscopy (XPS), temperature programmed reduction of hydrogen (TPR-H2), and transmission electron microscopy (TEM). Among the studied catalysts, the best results were obtained for the samples prepared by a two-step postsynthesis method, which achieved CO conversion of about 74%, and selectivity to liquid products of about 86%. The distribution of liquid products for Red-Me-Co20Beta was more diversified than for Red-Mi-Co20Beta. It was observed that significant influence of the zeolite dealumination of mesoporous zeolite on the catalytic performance in FTS. In contrast, for microporous catalysts, the dealumination did not play such a significant role and the relatively high activity is observed for both not dealuminated and dealuminated catalysts. The main liquid products of FTS on both mesoporous and microporous catalysts were C10-C14 isoalkanes and n-alkanes. The iso-/n-alkanes ratio for dealuminated zeolite catalysts was three times higher than that for not dealuminated ones, and was related to the presence of different kind of acidic sites in both zeolite catalysts..