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Journal Articles Imaging Neuroscience Year : 2024

The Past, Present, and Future of the Brain Imaging Data Structure (BIDS)

Russell Poldrack (1) , Christopher Markiewicz (1) , Stefan Appelhoff (2) , Yoni Ashar (3) , Tibor Auer (4) , Sylvain Baillet (5) , Shashank Bansal (6) , Leandro Beltrachini (7) , Christian Benar (8) , Giacomo Bertazzoli (9) , Suyash Bhogawar (10) , Ross Blair (1) , Marta Bortoletto (11) , Mathieu Boudreau (12) , Teon Brooks (1) , Vince Calhoun (13, 14) , Filippo Maria Castelli (15) , Patricia Clement (16) , Alexander Cohen (17) , Julien Cohen-Adad (12) , Sasha d'Ambrosio (18) , Gilles de Hollander (19) , María de la Iglesia-Vayá (20) , Alejandro de la Vega (21) , Arnaud Delorme (6) , Orrin Devinsky (22) , Dejan Draschkow (23) , Eugene Paul Duff (24) , Elizabeth Dupre (1) , Eric Earl (25) , Oscar Esteban (26) , Franklin Feingold (1) , Guillaume Flandin (27) , Anthony Galassi (28) , Giuseppe Gallitto (29) , Melanie Ganz (30) , Rémi Gau (31) , James Gholam (32) , Satrajit Ghosh (33) , Alessio Giacomel (34) , Ashley Gillman (35) , Padraig Gleeson (27) , Alexandre Gramfort (36) , Samuel Guay (37) , Giacomo Guidali (38) , Yaroslav Halchenko (39) , Daniel Handwerker (28) , Nell Hardcastle (1) , Peer Herholz (5) , Dora Hermes (40) , Christopher Honey (41) , Robert Innis (28) , Horea-Ioan Ioanas (39) , Andrew Jahn (42) , Agah Karakuzu (12) , David Keator (43) , Gregory Kiar (44) , Balint Kincses (29) , Angela Laird (45) , Jonathan Lau (46) , Alberto Lazari (47) , Jon Haitz Legarreta (48) , Adam Li (49) , Xiangrui Li (50) , Bradley Love (27) , Hanzhang Lu (51) , Eleonora Marcantoni (52) , Camille Maumet (53) , Giacomo Mazzamuto (54) , Steven Meisler (55) , Mark Mikkelsen (56) , Henk Mutsaerts (57) , Thomas Nichols (23) , Aki Nikolaidis (44) , Gustav Nilsonne (58) , Guiomar Niso (59) , Martin Norgaard (28) , Thomas Okell (23) , Robert Oostenveld (60) , Eduard Ort (61) , Patrick Park (62) , Mateusz Pawlik (63) , Cyril Pernet (31) , Franco Pestilli (21) , Jan Petr (64) , Christophe Phillips (65) , Jean-Baptiste Poline (5) , Luca Pollonini (66) , Pradeep Reddy Raamana (67) , Petra Ritter (68) , Gaia Rizzo (24) , Kay Robbins (69) , Alexander Rockhill (70) , Christine Rogers (71) , Ariel Rokem (72) , Chris Rorden (73) , Alexandre M Routier (74, 75, 76) , Jose Manuel Saborit-Torres (20) , Taylor Salo (77) , Michael Schirner (78) , Robert Smith (79) , Tamas Spisak (29) , Julia Sprenger (80) , Nicole Swann (81) , Martin Szinte (80) , Sylvain Takerkart (80) , Bertrand Thirion (36) , Adam Thomas (28) , Sajjad Torabian (43) , Gaël Varoquaux (82, 83) , Bradley Voytek (6) , Julius Welzel (84) , Martin Wilson (85) , Tal Yarkoni (86) , Krzysztof Gorgolewski (1)
1 Stanford University
2 Max Planck Institute for Human Development
3 University of Colorado Anschutz [Aurora]
4 UNIS - University of Surrey
5 MNI - McConnell Brain Imaging Centre
6 UC San Diego - University of California [San Diego]
7 CUBRIC - Cardiff University's Brain Research Imaging Centre [Cardiff]
8 INS - Institut de Neurosciences des Systèmes
9 UNITN - Università degli Studi di Trento = University of Trento
10 Rackspace Technology [San Antonio]
11 CIMEC - Center for Mind/Brain Sciences
12 EPM - École Polytechnique de Montréal
13 Georgia Institute of Technology [Atlanta]
14 Emory University [Atlanta, GA]
15 LENS - European Laboratory for Non-Linear Spectroscopy
16 Ghent University Hospital
17 KCH - King's College Hospital
18 UNIMI - Università degli Studi di Milano = University of Milan
19 UZH - Universität Zürich [Zürich] = University of Zurich
20 FISABIO - Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunitat Valenciana [Espagne]
21 University of Texas at Austin [Austin]
22 NYU Langone Medical Center - New York University Langone Medical Center
23 University of Oxford
24 Imperial College London
25 NIMH - National Institute of Mental Health
26 CHUV - Centre Hospitalier Universitaire Vaudois = Lausanne University Hospital [Lausanne]
27 UCL - University College of London [London]
28 NIMH - National Institute of Mental Health
29 AöR - University Hospital Essen
30 UCPH - University of Copenhagen = Københavns Universitet
31 Copenhagen University Hospital
32 Montreal Neurological Institute and Hospital
33 MIT - Massachusetts Institute of Technology
34 King‘s College London
35 CSIRO Energy Technology - Commonwealth Scientific and Industrial Research Organisation Energy Technology
36 MIND - Modèles et inférence pour les données de Neuroimagerie
37 UdeM - Université de Montréal
38 UNIMIB - Università degli Studi di Milano-Bicocca = University of Milano-Bicocca
39 Dartmouth College [Hanover]
40 Mayo Clinic [Rochester]
41 JHU - Johns Hopkins University
42 University of Michigan [Ann Arbor]
43 UC Irvine - University of California [Irvine]
44 Child Mind Institute
45 FIU - Florida International University [Miami]
46 UIUC - University of Illinois at Urbana-Champaign [Urbana]
47 Nuffield Department of Clinical Neurosciences [Oxford]
48 Brigham and Women’s Hospital [Boston, MA]
49 Columbia University [New York]
50 OSU - Ohio State University [Columbus]
51 Johns Hopkins University School of Medicine [Baltimore]
52 University of Glasgow
53 EMPENN - Neuroimagerie: méthodes et applications
54 INO-CNR - Istituto Nazionale di Ottica [Firenze]
55 Harvard University
56 Weill Cornell Medicine [Cornell University]
57 VU - Vrije Universiteit Amsterdam [Amsterdam]
58 Karolinska Institutet [Stockholm]
59 IRYCIS - Instituto Ramon y Cajal de Investigacion Sanitaria [Madrid, Spain]
60 Donders Institute for Brain, Cognition and Behaviour
61 Heinrich Heine Universität Düsseldorf = Heinrich Heine University [Düsseldorf]
62 UWO - University of Western Ontario
63 University of Salzburg
64 HZDR - Helmholtz-Zentrum Dresden-Rossendorf
65 Université de Liège
66 University of Houston
67 PITT - University of Pittsburgh
68 Charité - UniversitätsMedizin = Charité - University Hospital [Berlin]
69 UTSA - The University of Texas at San Antonio
70 OHSU - Oregon Health and Science University [Portland]
71 McGill University = Université McGill [Montréal, Canada]
72 University of Washington [Seattle]
73 University of South Carolina [Columbia]
74 ICM - Institut du Cerveau = Paris Brain Institute
75 ARAMIS - Algorithms, models and methods for images and signals of the human brain = Algorithmes, modèles et méthodes pour les images et les signaux du cerveau humain [ICM Paris]
76 CHU Pitié-Salpêtrière [AP-HP]
77 Perelman School of Medicine
78 Bernstein Center for Computational Neuroscience [Berlin]
79 The Florey Institute of Neuroscience and Mental Health
80 INT - Institut de Neurosciences de la Timone
81 University of Oregon [Eugene]
82 SODA - Méthodes computationnelles et mathématiques pour comprendre la société et la santé à partir de données
83 Inria Saclay - Ile de France
84 CAU - Christian-Albrechts-Universität zu Kiel = Christian-Albrechts University of Kiel = Université Christian-Albrechts de Kiel
85 University of Birmingham [Birmingham]
86 Google Inc
Tibor Auer
  • Function : Author
Ross Blair
  • Function : Author
Teon Brooks
  • Function : Author
Camille Maumet
Tal Yarkoni
  • Function : Author

Abstract

The Brain Imaging Data Structure (BIDS) is a community-driven standard for the organization of data and metadata from a growing range of neuroscience modalities. This paper is meant as a history of how the standard has developed and grown over time. We outline the principles behind the project, the mechanisms by which it has been extended, and some of the challenges being addressed as it evolves. We also discuss the lessons learned through the project, with the aim of enabling researchers in other domains to learn from the success of BIDS.
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hal-04346097 , version 1 (23-02-2024)

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Russell Poldrack, Christopher Markiewicz, Stefan Appelhoff, Yoni Ashar, Tibor Auer, et al.. The Past, Present, and Future of the Brain Imaging Data Structure (BIDS). Imaging Neuroscience, 2024, 2, pp.1-19. ⟨10.1162/imag_a_00103⟩. ⟨hal-04346097⟩
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