Recherche - Sorbonne Université

Filtrer vos résultats

63 résultats
Image document

Filling the gap: Micro-C accesses the nucleosomal fiber at 100-1000 bp resolution.

Julien Mozziconacci , Romain Koszul
Genome Biology, 2015, 16 (1), pp.169. ⟨10.1186/s13059-015-0744-8⟩
Article dans une revue pasteur-01420328v1
Image document

3D genome reconstruction from chromosomal contacts

Annick Lesne , Julien Riposo , Paul Roger , Axel Cournac , Julien Mozziconacci
Nature Methods, 2014, 11, pp.1141-1143. ⟨10.1038/NMETH.3104⟩
Article dans une revue hal-02324120v1

Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins

Virginia S. Lioy , Axel Cournac , Martial Marbouty , Stéphane Duigou , Julien Mozziconacci , et al.
Cell, 2018, 172 (4), pp.771--783.e18. ⟨10.1016/j.cell.2017.12.027⟩
Article dans une revue hal-02180787v1
Image document

Computer vision for pattern detection in chromosome contact maps

Cyril Matthey-Doret , Lyam Baudry , Axel Breuer , Rémi Montagne , Nadège Guiglielmoni , et al.
Nature Communications, 2020, 11 (1), pp.5795. ⟨10.1038/s41467-020-19562-7⟩
Article dans une revue pasteur-03263561v1
Image document

Characterizing meiotic chromosomes' structure and pairing using a designer sequence optimized for Hi‐C

Héloise Muller , Vittore F Scolari , Nicolas Agier , Aurele Piazza , Agnès Thierry , et al.
Molecular Systems Biology, 2018, 14 (7), pp.e8293. ⟨10.15252/msb.20188293⟩
Article dans une revue hal-01890095v1

Plasmodium falciparum population dynamics in a cohort of pregnant women in Senegal

Juliette Guitard , Pernille Andersen , Caroline Ermont , Sédami Gnidehou , Nadine Fievet , et al.
Malaria Journal, 2010, 9 (1), pp.165. ⟨10.1186/1475-2875-9-165⟩
Article dans une revue hal-03962282v1
Image document

High-quality genome (re)assembly using chromosomal contact data

Hervé Marie-Nelly , Martial Marbouty , Axel Cournac , Jean-François Flot , Gianni Liti , et al.
Nature Communications, 2014, 5, pp.5695. ⟨10.1038/ncomms6695⟩
Article dans une revue hal-01138788v1
Image document

Nucleosome positioning on large tandem DNA repeats of the ’601’ sequence engineered in Saccharomyces cerevisiae

Astrid Lancrey , Alexandra Joubert , Evelyne Duvernois-Berthet , Etienne Routhier , Saurabh Raj , et al.
Journal of Molecular Biology, 2022, ⟨10.1016/j.jmb.2022.167497⟩
Article dans une revue hal-03343705v2
Image document

Generation and Analysis of Chromosomal Contact Maps of Yeast Species.

Axel Cournac , Martial Marbouty , Julien Mozziconacci , Romain Koszul
Methods in Molecular Biology, 2016, Yeast Functional Genomics, 1361, pp.227-45. ⟨10.1007/978-1-4939-3079-1_13⟩
Article dans une revue pasteur-01419912v1
Image document

3D organization of synthetic and scrambled chromosomes

Guillaume Mercy , Julien Mozziconacci , Vittore F Scolari , Kun Yang , Guanghou Zhao , et al.
Science, 2017, 355 (6329), pp.eaaf4597. ⟨10.1126/science.aaf4597⟩
Article dans une revue pasteur-01523221v1
Image document

Kinetic Signature of Cooperativity in the Irreversible Collapse of a Polymer

Vittore F Scolari , Guillaume Mercy , Romain Koszul , Annick Lesne , Julien Mozziconacci
Physical Review Letters, 2018, 121 (5), pp.057801. ⟨10.1103/PhysRevLett.121.057801⟩
Article dans une revue hal-01992814v1
Image document

Chromosome folding and prophage activation reveal specific genomic architecture for intestinal bacteria

Quentin Lamy-Besnier , Amaury Bignaud , Julian R Garneau , Marie Titecat , Devon E Conti , et al.
Microbiome, 2023, 11 (1), pp.111. ⟨10.1186/s40168-023-01541-x⟩
Article dans une revue pasteur-04158849v1
Image document

Condensin- and Replication-Mediated Bacterial Chromosome Folding and Origin Condensation Revealed by Hi-C and Super-resolution Imaging.

Martial Marbouty , Antoine Le gall , Diego I Cattoni , Axel Cournac , Alan Koh , et al.
Molecular Cell, 2015, 59 (4), pp.588-602. ⟨10.1016/j.molcel.2015.07.020⟩
Article dans une revue pasteur-01419993v1
Image document

Transcription-induced domains form the elementary constraining building blocks of bacterial chromosomes

Amaury Bignaud , Charlotte Cockram , Céline Borde , Justine Groseille , Eric Allemand , et al.
Nature Structural and Molecular Biology, 2024, ⟨10.1038/s41594-023-01178-2⟩
Article dans une revue hal-04468362v1

Generation of a Metagenomics Proximity Ligation 3C Library of a Mammalian Gut Microbiota

Théo Foutel-Rodier , Agnès Thierry , Romain Koszul , Martial Marbouty
High-Density Sequencing Applications in Microbial Molecular Genetics, 612, pp.183-195, 2018, Methods in Enzymology, 978-0-12-815993-4. ⟨10.1016/bs.mie.2018.08.001⟩
Chapitre d'ouvrage pasteur-02866616v1
Image document

Exogenous chromosomes reveal how sequence composition drives chromatin assembly, activity, folding and compartmentalization

Christophe Chapard , Léa Meneu , Jacques Serizay , Alex Westbrook , Etienne Routhier , et al.
2023
Pré-publication, Document de travail hal-04278801v1
Image document

The silencing factor Sir3 is a molecular bridge that sticks together distant loci

Myriam Ruault , Vittore F Scolari , Luciana Lazar-Stefanita , Antoine Hocher , Isabelle Loïodice , et al.
2020
Pré-publication, Document de travail hal-03013702v1
Image document

L'organisation 3D des chromosomes synthétiques de levure

Guillaume Mercy
Génomique, Transcriptomique et Protéomique [q-bio.GN]. Sorbonne Université, 2018. Français. ⟨NNT : 2018SORUS034⟩
Thèse tel-02111002v1

Normalization of Chromosome Contact Maps: Matrix Balancing and Visualization

Cyril Matthey-Doret , Lyam Baudry , Shogofa Mortaza , Pierrick Moreau , Romain Koszul , et al.
Silvio Bicciato, Francesco Ferrari. Hi-C Data Analysis : methods and protocols, 2301, Springer US, pp.1-15, 2022, Methods in Molecular Biology, 978-1-0716-1390-0 (ebook). ⟨10.1007/978-1-0716-1390-0_1⟩
Chapitre d'ouvrage pasteur-03376844v1

Insight into Antigenic Diversity of VAR2CSA-DBL5ε Domain from Multiple Plasmodium falciparum Placental Isolates

Sédami Gnidehou , Leon Jessen , Stéphane Gangnard , Caroline Ermont , Choukri Triqui , et al.
PLoS ONE, 2010, 5 (10), pp.e13105. ⟨10.1371/journal.pone.0013105⟩
Article dans une revue hal-03962279v1
Image document

Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization

Jérémy Gauthier , Hélène Boulain , Joke J F A van Vugt , Lyam Baudry , Emma Persyn , et al.
Communications Biology, 2021, 4 (1), pp.1-15. ⟨10.1038/s42003-020-01623-8⟩
Article dans une revue hal-03127732v1
Image document

Spatial reorganization of telomeres in long-lived quiescent cells

Micol Guidi , Myriam Ruault , Martial Marbouty , Isabelle Loïodice , Axel Cournac , et al.
Genome Biology, 2015, 16 (1), pp.206. ⟨10.1186/s13059-015-0766-2⟩
Article dans une revue hal-01206018v1
Image document

A probabilistic approach for genome assembly from high-throughput chromosome conformation capture data

Hervé Marie-Nelly
Genomics [q-bio.GN]. Université Pierre & Marie Curie - Paris 6, 2013. English. ⟨NNT : ⟩
Thèse tel-03822543v1
Image document

Rapport de conjoncture 2019 : CID 51 Modélisation mathématique, informatique et physique pour les sciences du vivant

Franck Picard , Myriam Ferro , Alice Cleynen , Marie Doumic , Xavier Duchemin , et al.
Comité national de la recherche scientifique. 2020
Rapport hal-04360199v1

Diagnosis accuracy of muscule MRI for autoimmune myopathies: Multicentric prospective study (DARWIM)

Yves Allenbach , Guillaume Mercy , Jean-Francois Deux , Frantz Foissac , Yoland Shoindre , et al.
4th Global Conference On Myositis (GCOM 2022), Jun 2022, Prague, Czech Republic
Poster de conférence hal-03832571v1
Image document

Chromosome-level quality scaffolding of brown algal genomes using InstaGRAAL, a proximity ligation-based scaffolder

Lyam Baudry , Martial Marbouty , Hervé Marie-Nelly , Alexandre Cormier , Nadège Guiglielmoni , et al.
2021
Pré-publication, Document de travail hal-02947625v1
Image document

Insights into early animal evolution from the genome of the xenacoelomorph worm Xenoturbella bocki

Philipp Schiffer , Paschalis Natsidis , Daniel Leite , Helen Robertson , François Lapraz , et al.
eLife, 2024, 13, pp.e94948. ⟨10.7554/eLife.94948⟩
Article dans une revue hal-04791315v1
Image document

Bacterial Membrane Vesicles as a Novel Strategy for Extrusion of Antimicrobial Bismuth Drug in Helicobacter pylori

Sumith Kumar , Christine Schmitt , Olivier Gorgette , Martial Marbouty , Magalie Duchateau , et al.
mBio, 2022, 13 (5), pp.e0163322. ⟨10.1128/mbio.01633-22⟩
Article dans une revue pasteur-04093078v1
Image document

Chromosomal assembly of the flat oyster ( Ostrea edulis L.) genome as a new genetic resource for aquaculture

Isabelle Boutet , Homère Alves Monteiro , Lyam Baudry , Takeshi Takeuchi , Eric Bonnivard , et al.
Evolutionary Applications, 2022, 15 (11), pp.1730-1748. ⟨10.1111/eva.13462⟩
Article dans une revue hal-03896508v1

Total synthesis of a functional designer eukaryotic chromosome.

Narayana Annaluru , Héloïse Muller , Leslie A. Mitchell , Sivaprakash Ramalingam , Giovanni Stracquadanio , et al.
Science, 2014, 344 (6179), pp.55-8. ⟨10.1126/science.1249252⟩
Article dans une revue pasteur-01420002v1